Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 34041 | 0.74 | 0.883787 |
Target: 5'- cGGGCGGGAccGCGAUCAcgCgcacgCGGCg -3' miRNA: 3'- cCCUGCCCUuuUGCUAGUa-Gaa---GCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 10901 | 0.68 | 0.995807 |
Target: 5'- gGGGACGGGGuacagGGGCGGgggCAggUCcUCGAa -3' miRNA: 3'- -CCCUGCCCU-----UUUGCUa--GU--AGaAGCUg -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 46978 | 0.66 | 0.99919 |
Target: 5'- uGGACauGGAGACGAgcuUCAUCUUCGu- -3' miRNA: 3'- cCCUGccCUUUUGCU---AGUAGAAGCug -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 98460 | 0.66 | 0.999398 |
Target: 5'- uGGcGCGGGAAGuacacguaccgcaucACGAggucCAcCUUCGACg -3' miRNA: 3'- -CCcUGCCCUUU---------------UGCUa---GUaGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 107082 | 0.7 | 0.983247 |
Target: 5'- aGGGggugccgcuguGCGcGGAgccucaAGACG-UCGUCUUCGACg -3' miRNA: 3'- -CCC-----------UGC-CCU------UUUGCuAGUAGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 51122 | 0.7 | 0.983247 |
Target: 5'- -cGGCGGGAGGGCGAgaUgAUCgcCGACu -3' miRNA: 3'- ccCUGCCCUUUUGCU--AgUAGaaGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 50980 | 0.69 | 0.986897 |
Target: 5'- cGGGCGGGGcgccgcGCGuUCGUCgUCGGCc -3' miRNA: 3'- cCCUGCCCUuu----UGCuAGUAGaAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 123342 | 1.14 | 0.007471 |
Target: 5'- aGGGACGGGAAAACGAUCAUCUUCGACg -3' miRNA: 3'- -CCCUGCCCUUUUGCUAGUAGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 116975 | 0.78 | 0.709597 |
Target: 5'- aGGACGaGGAGGGCGGgcaCAUCcUCGACa -3' miRNA: 3'- cCCUGC-CCUUUUGCUa--GUAGaAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 51498 | 0.68 | 0.992969 |
Target: 5'- cGGugGGGuucgugcaccCGAUCAucauggcgcUCUUCGGCg -3' miRNA: 3'- cCCugCCCuuuu------GCUAGU---------AGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 38248 | 0.69 | 0.989901 |
Target: 5'- aGGGCGGGc--GCgGAUCAUUUcgCGACg -3' miRNA: 3'- cCCUGCCCuuuUG-CUAGUAGAa-GCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 62498 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGcgGCcgccuauUUAUUUUCGACa -3' miRNA: 3'- cCCUGCCCUuuUGcu-----AGUAGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 10344 | 0.71 | 0.960759 |
Target: 5'- cGGGGCGuGGGGAACG-UCGUCacgccgUCaGACa -3' miRNA: 3'- -CCCUGC-CCUUUUGCuAGUAGa-----AG-CUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 23084 | 0.69 | 0.991185 |
Target: 5'- cGGGGucCGGGAAGACGGuguaccugcucUCGcUCUUCcgGACg -3' miRNA: 3'- -CCCU--GCCCUUUUGCU-----------AGU-AGAAG--CUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 83662 | 0.7 | 0.978878 |
Target: 5'- aGGGAccCGGGggGAgGGggcuuccgCcgCUUCGGCg -3' miRNA: 3'- -CCCU--GCCCuuUUgCUa-------GuaGAAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 85411 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGAcGCGcacUCGUCcaUGACg -3' miRNA: 3'- cCCUGCCCUUuUGCu--AGUAGaaGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 56579 | 0.69 | 0.991185 |
Target: 5'- cGGGACcccguGGAGAGCGAgu-UCgUCGACc -3' miRNA: 3'- -CCCUGc----CCUUUUGCUaguAGaAGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 58431 | 0.68 | 0.996434 |
Target: 5'- cGGAgCGGcGAGACGAUCAgCggCGACc -3' miRNA: 3'- cCCU-GCCcUUUUGCUAGUaGaaGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 34551 | 0.7 | 0.981157 |
Target: 5'- -cGGCGGGAGAGCG-UCcuGUCcgCGACg -3' miRNA: 3'- ccCUGCCCUUUUGCuAG--UAGaaGCUG- -5' |
|||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 48319 | 0.69 | 0.986897 |
Target: 5'- gGGGcACGGGGAuguGCGuggacugCUUCGACu -3' miRNA: 3'- -CCC-UGCCCUUu--UGCuagua--GAAGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home