miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 133690 0.68 0.566885
Target:  5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3'
miRNA:   3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 133690 0.68 0.566885
Target:  5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3'
miRNA:   3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 133577 0.77 0.181127
Target:  5'- gGCGUGCGCgCGaGCuUCGCCUCCGcgcgcaaggGCCCGc -3'
miRNA:   3'- -UGUAUGCG-GC-CG-AGCGGAGGC---------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133577 0.77 0.181127
Target:  5'- gGCGUGCGCgCGaGCuUCGCCUCCGcgcgcaaggGCCCGc -3'
miRNA:   3'- -UGUAUGCG-GC-CG-AGCGGAGGC---------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133027 0.67 0.646073
Target:  5'- gGCugauCGcCCGGCUCGUCguguaCgGGCCCGa -3'
miRNA:   3'- -UGuau-GC-GGCCGAGCGGa----GgCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 132198 0.66 0.704231
Target:  5'- gGCGUcgagcGCGCuCGcggacacGCUCGCCUCCauCCCGa -3'
miRNA:   3'- -UGUA-----UGCG-GC-------CGAGCGGAGGcuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 131374 0.67 0.655999
Target:  5'- ---cGCGCgCGGUaCGUCUUCGACCgCGg -3'
miRNA:   3'- uguaUGCG-GCCGaGCGGAGGCUGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 131039 0.66 0.675791
Target:  5'- gGCGUGCGCg----CGCCUCCuGGCCCu -3'
miRNA:   3'- -UGUAUGCGgccgaGCGGAGG-CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 128506 0.66 0.694468
Target:  5'- cGCGUACGUggucgcgCGGCUgccgccCGCCgCCGugCCa -3'
miRNA:   3'- -UGUAUGCG-------GCCGA------GCGGaGGCugGGc -5'
25522 3' -60.7 NC_005337.1 + 127888 0.69 0.509103
Target:  5'- cGCGcgGCGCCGGCgagCGCgUgCGGgCCGa -3'
miRNA:   3'- -UGUa-UGCGGCCGa--GCGgAgGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 127695 0.66 0.705204
Target:  5'- -----gGCCGGCUCGUCcaUCCGGaCCGc -3'
miRNA:   3'- uguaugCGGCCGAGCGG--AGGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 126131 0.66 0.675791
Target:  5'- cCGUGCGCgCGGCcaugcccggCGUCcCCGACUCGc -3'
miRNA:   3'- uGUAUGCG-GCCGa--------GCGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 126044 0.66 0.68564
Target:  5'- uCAUgcGCGCCGGUgcggacgCGaCCcuugCCGACCUGg -3'
miRNA:   3'- uGUA--UGCGGCCGa------GC-GGa---GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 124873 0.66 0.714903
Target:  5'- cGCAUGcCGCCuacGGCcuccgaggaccUCGCCgUCUGGCUCGa -3'
miRNA:   3'- -UGUAU-GCGG---CCG-----------AGCGG-AGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 121294 1.07 0.001384
Target:  5'- gACAUACGCCGGCUCGCCUCCGACCCGc -3'
miRNA:   3'- -UGUAUGCGGCCGAGCGGAGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 120372 0.67 0.636136
Target:  5'- ---gAC-CCGGCgCGCCUgCCGGCUCGu -3'
miRNA:   3'- uguaUGcGGCCGaGCGGA-GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 119026 0.67 0.606336
Target:  5'- aACGUucgGCGCCGGCgcCGCCaggaccggUUCGACCUc -3'
miRNA:   3'- -UGUA---UGCGGCCGa-GCGG--------AGGCUGGGc -5'
25522 3' -60.7 NC_005337.1 + 118783 0.7 0.445065
Target:  5'- ---gACGCCGGCggcggCGCCgUCGugCCGc -3'
miRNA:   3'- uguaUGCGGCCGa----GCGGaGGCugGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.