Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25522 | 5' | -49.3 | NC_005337.1 | + | 79110 | 0.67 | 0.995313 |
Target: 5'- gCCGgaGAUGAUguacGAGA-GGUUGAUGCuGCu -3' miRNA: 3'- gGGU--UUACUA----CUCUgCCAACUGCG-CG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 108531 | 0.66 | 0.99712 |
Target: 5'- gCUGGAcGgcGcGACGGUgcggGGCGCGCg -3' miRNA: 3'- gGGUUUaCuaCuCUGCCAa---CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 59002 | 0.67 | 0.995313 |
Target: 5'- gCUCAAGcgGAgcucgcugGAGugGGU--GCGCGCg -3' miRNA: 3'- -GGGUUUa-CUa-------CUCugCCAacUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 80241 | 0.67 | 0.99366 |
Target: 5'- cUCCGAcugcGUGAUaucGAUGGgcGACGUGCg -3' miRNA: 3'- -GGGUU----UACUAcu-CUGCCaaCUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 132757 | 0.66 | 0.997575 |
Target: 5'- aCgAAGUGgcG-GACGcGcUGGCGCGCg -3' miRNA: 3'- gGgUUUACuaCuCUGC-CaACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 81025 | 0.67 | 0.996597 |
Target: 5'- gUCCGGGcgugGAGAUGGcgggGAUGCGCa -3' miRNA: 3'- -GGGUUUacuaCUCUGCCaa--CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 30074 | 0.68 | 0.990338 |
Target: 5'- cCCCGAG-GAUGGcGCGGcgcuCGCGCa -3' miRNA: 3'- -GGGUUUaCUACUcUGCCaacuGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 65697 | 0.66 | 0.998597 |
Target: 5'- uCCCuguUGGUGcacAGccgcacGCGGUggGGCGCGCc -3' miRNA: 3'- -GGGuuuACUAC---UC------UGCCAa-CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 70758 | 0.68 | 0.988968 |
Target: 5'- gCCCGAGgccugcacgucGGUGAGcACGGagGACaGCGCc -3' miRNA: 3'- -GGGUUUa----------CUACUC-UGCCaaCUG-CGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 52224 | 0.69 | 0.983944 |
Target: 5'- cUCCAgcggGAUGAUGcAGACGGgcGAC-UGCu -3' miRNA: 3'- -GGGU----UUACUAC-UCUGCCaaCUGcGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 13622 | 0.67 | 0.994454 |
Target: 5'- uCCCGGGUGAaGAGcACcucgucuGGaagcagGACGCGCg -3' miRNA: 3'- -GGGUUUACUaCUC-UG-------CCaa----CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 75403 | 0.67 | 0.995313 |
Target: 5'- gCCGcGcgGAUGcuGCGGacGGCGCGCg -3' miRNA: 3'- gGGU-UuaCUACucUGCCaaCUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 38396 | 0.67 | 0.994537 |
Target: 5'- gCCGAG-GAgucgGAGACGuucucUGACGUGCg -3' miRNA: 3'- gGGUUUaCUa---CUCUGCca---ACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 53416 | 0.66 | 0.998597 |
Target: 5'- aCCuGGUGAgcgugGuGACGG-UGACGCa- -3' miRNA: 3'- gGGuUUACUa----CuCUGCCaACUGCGcg -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 123843 | 0.66 | 0.998597 |
Target: 5'- uCCCGGcguucgcggcGUGcAUG-GACGGcgGGCGCGg -3' miRNA: 3'- -GGGUU----------UAC-UACuCUGCCaaCUGCGCg -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 117707 | 0.69 | 0.979739 |
Target: 5'- gUCCAcagcGUGAacgUGaAGACGGUgcugcggGACGCGUg -3' miRNA: 3'- -GGGUu---UACU---AC-UCUGCCAa------CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 6613 | 0.72 | 0.921645 |
Target: 5'- gCCCAucugGAUGAGGCgccggcacgccgcagGGUUGAagaccgcCGCGCg -3' miRNA: 3'- -GGGUuua-CUACUCUG---------------CCAACU-------GCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 99084 | 0.67 | 0.995313 |
Target: 5'- uUCCGGcaGGUGuGGACGGcgGACGaCGCc -3' miRNA: 3'- -GGGUUuaCUAC-UCUGCCaaCUGC-GCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 48931 | 0.67 | 0.994537 |
Target: 5'- gUCCGGcaacugcggcGUGA--AGGCGGUgaugGACGUGCu -3' miRNA: 3'- -GGGUU----------UACUacUCUGCCAa---CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 109357 | 0.68 | 0.990338 |
Target: 5'- gCCCGAggcgGUGcaguacacgGAGGCGGgc-ACGCGCg -3' miRNA: 3'- -GGGUU----UACua-------CUCUGCCaacUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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