miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25524 3' -55.4 NC_005337.1 + 120623 1.12 0.002253
Target:  5'- cGGCAAGACGGGCGUCACGAUCGAGGAg -3'
miRNA:   3'- -CCGUUCUGCCCGCAGUGCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 111226 0.77 0.37437
Target:  5'- cGGCGcgcGGCGuGCGUCACGAaCGAGGAc -3'
miRNA:   3'- -CCGUu--CUGCcCGCAGUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 76854 0.75 0.489905
Target:  5'- cGGUAgauGGACGGGCGUCcggACGGcUCGGcGGAa -3'
miRNA:   3'- -CCGU---UCUGCCCGCAG---UGCU-AGCU-CCU- -5'
25524 3' -55.4 NC_005337.1 + 102827 0.75 0.489905
Target:  5'- gGGCAacaAGACGcGCGUCAUGGUCGGGc- -3'
miRNA:   3'- -CCGU---UCUGCcCGCAGUGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 68350 0.73 0.568641
Target:  5'- cGG-AGGACGGcGCgGUCGCGAUCGcguGGAg -3'
miRNA:   3'- -CCgUUCUGCC-CG-CAGUGCUAGCu--CCU- -5'
25524 3' -55.4 NC_005337.1 + 131159 0.73 0.588887
Target:  5'- cGCGAGGCcGGCcgcgGUCGCGGUCGcGGAg -3'
miRNA:   3'- cCGUUCUGcCCG----CAGUGCUAGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 11934 0.73 0.59906
Target:  5'- cGGCAcc-CGGGCG-CGCGccGUCGAGGGa -3'
miRNA:   3'- -CCGUucuGCCCGCaGUGC--UAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 82620 0.72 0.650142
Target:  5'- gGGCGAcGGCGGGCGcUgGCGAcCGcGGAg -3'
miRNA:   3'- -CCGUU-CUGCCCGC-AgUGCUaGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 72361 0.72 0.660348
Target:  5'- --gGAGACGGaCGUCGaGAUCGGGGAc -3'
miRNA:   3'- ccgUUCUGCCcGCAGUgCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 50374 0.71 0.670531
Target:  5'- gGGCccGGGcACGGGCGcCugGcgCGGGGGc -3'
miRNA:   3'- -CCG--UUC-UGCCCGCaGugCuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 47673 0.71 0.670531
Target:  5'- cGGCAugcuGGCGGGCGUCcgcguGCGGUaCGAcGGc -3'
miRNA:   3'- -CCGUu---CUGCCCGCAG-----UGCUA-GCU-CCu -5'
25524 3' -55.4 NC_005337.1 + 993 0.71 0.680683
Target:  5'- cGGCGcgcggaGGGCGGGCGUCGCc-UgGAGGc -3'
miRNA:   3'- -CCGU------UCUGCCCGCAGUGcuAgCUCCu -5'
25524 3' -55.4 NC_005337.1 + 993 0.71 0.680683
Target:  5'- cGGCGcgcggaGGGCGGGCGUCGCc-UgGAGGc -3'
miRNA:   3'- -CCGU------UCUGCCCGCAGUGcuAgCUCCu -5'
25524 3' -55.4 NC_005337.1 + 93338 0.71 0.690795
Target:  5'- cGGC--GGCGGGagGUCGaggaGGUCGAGGAc -3'
miRNA:   3'- -CCGuuCUGCCCg-CAGUg---CUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 132626 0.7 0.720802
Target:  5'- cGGcCAAGcucgucgccGCGGGCGcgcgcaucgaccUC-CGAUCGAGGAa -3'
miRNA:   3'- -CC-GUUC---------UGCCCGC------------AGuGCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 13613 0.7 0.720802
Target:  5'- cGCcAGcCGGGCGUCGCcgcCGAGGGa -3'
miRNA:   3'- cCGuUCuGCCCGCAGUGcuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 84030 0.7 0.730665
Target:  5'- cGGCGGGACacaccGGCGgaggcgcgCACGAcgcccUCGGGGAg -3'
miRNA:   3'- -CCGUUCUGc----CCGCa-------GUGCU-----AGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 38245 0.7 0.759706
Target:  5'- aGUAGGGCGGGCGcggaucauuUCGCGA-CG-GGAu -3'
miRNA:   3'- cCGUUCUGCCCGC---------AGUGCUaGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 101255 0.69 0.778518
Target:  5'- cGCuGGACGGcGCGgacgcgaagaUCGCGGccaUCGAGGAc -3'
miRNA:   3'- cCGuUCUGCC-CGC----------AGUGCU---AGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 84101 0.69 0.778518
Target:  5'- cGGCcguccGGACGGGCGaaGCaGUCgGAGGAg -3'
miRNA:   3'- -CCGu----UCUGCCCGCagUGcUAG-CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.