miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25524 3' -55.4 NC_005337.1 + 993 0.71 0.680683
Target:  5'- cGGCGcgcggaGGGCGGGCGUCGCc-UgGAGGc -3'
miRNA:   3'- -CCGU------UCUGCCCGCAGUGcuAgCUCCu -5'
25524 3' -55.4 NC_005337.1 + 993 0.71 0.680683
Target:  5'- cGGCGcgcggaGGGCGGGCGUCGCc-UgGAGGc -3'
miRNA:   3'- -CCGU------UCUGCCCGCAGUGcuAgCUCCu -5'
25524 3' -55.4 NC_005337.1 + 1044 0.68 0.855709
Target:  5'- cGgGAGGCGGGCGgCGgGAggccggCGGGGGc -3'
miRNA:   3'- cCgUUCUGCCCGCaGUgCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 1044 0.68 0.855709
Target:  5'- cGgGAGGCGGGCGgCGgGAggccggCGGGGGc -3'
miRNA:   3'- cCgUUCUGCCCGCaGUgCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 9707 0.66 0.910908
Target:  5'- aGCGcuuGGACGcGGCcUCGCGcagCGGGGAg -3'
miRNA:   3'- cCGU---UCUGC-CCGcAGUGCua-GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 11320 0.68 0.855709
Target:  5'- uGGUGuuguuGGCGGcGuCGUCGCGGcCGGGGAu -3'
miRNA:   3'- -CCGUu----CUGCC-C-GCAGUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 11934 0.73 0.59906
Target:  5'- cGGCAcc-CGGGCG-CGCGccGUCGAGGGa -3'
miRNA:   3'- -CCGUucuGCCCGCaGUGC--UAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 13613 0.7 0.720802
Target:  5'- cGCcAGcCGGGCGUCGCcgcCGAGGGa -3'
miRNA:   3'- cCGuUCuGCCCGCAGUGcuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 13658 0.68 0.847844
Target:  5'- cGCGGGAUGGGCaugaagaaGUCuACGAagaacaCGAGGAg -3'
miRNA:   3'- cCGUUCUGCCCG--------CAG-UGCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 16650 0.68 0.847844
Target:  5'- cGGCGGuGACGcGGCGgC-CGGUCGAGa- -3'
miRNA:   3'- -CCGUU-CUGC-CCGCaGuGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 24204 0.67 0.870827
Target:  5'- cGGCGAGGCGcGCGUCGaGGUgGAGc- -3'
miRNA:   3'- -CCGUUCUGCcCGCAGUgCUAgCUCcu -5'
25524 3' -55.4 NC_005337.1 + 25295 0.66 0.927806
Target:  5'- cGCAcGGCGGGCGggcCGCGcGUCGAccGGc -3'
miRNA:   3'- cCGUuCUGCCCGCa--GUGC-UAGCU--CCu -5'
25524 3' -55.4 NC_005337.1 + 30645 0.66 0.910908
Target:  5'- uGGCGAGGgaGGcugccGCGUCGCGGgccuucCGGGGGu -3'
miRNA:   3'- -CCGUUCUg-CC-----CGCAGUGCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 35703 0.66 0.904802
Target:  5'- uGGCGAGcGCGGGCuccGUCuacCGGUgCGuGGAc -3'
miRNA:   3'- -CCGUUC-UGCCCG---CAGu--GCUA-GCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 38245 0.7 0.759706
Target:  5'- aGUAGGGCGGGCGcggaucauuUCGCGA-CG-GGAu -3'
miRNA:   3'- cCGUUCUGCCCGC---------AGUGCUaGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 41142 0.66 0.932456
Target:  5'- cGGCGAGACGcGCGUC-CGGgaccgucUCcAGGGg -3'
miRNA:   3'- -CCGUUCUGCcCGCAGuGCU-------AGcUCCU- -5'
25524 3' -55.4 NC_005337.1 + 47673 0.71 0.670531
Target:  5'- cGGCAugcuGGCGGGCGUCcgcguGCGGUaCGAcGGc -3'
miRNA:   3'- -CCGUu---CUGCCCGCAG-----UGCUA-GCU-CCu -5'
25524 3' -55.4 NC_005337.1 + 47824 0.66 0.932456
Target:  5'- uGCAcGACGuGGUGUgcauccgcaaggaCGCGAcCGAGGAc -3'
miRNA:   3'- cCGUuCUGC-CCGCA-------------GUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 50374 0.71 0.670531
Target:  5'- gGGCccGGGcACGGGCGcCugGcgCGGGGGc -3'
miRNA:   3'- -CCG--UUC-UGCCCGCaGugCuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 51122 0.69 0.787732
Target:  5'- cGGCGGGA-GGGCGagAUGAUCGccGAc -3'
miRNA:   3'- -CCGUUCUgCCCGCagUGCUAGCucCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.