miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25524 3' -55.4 NC_005337.1 + 90536 0.66 0.910908
Target:  5'- gGGCGAGAC-GGUGaUCACGGUCu-GGc -3'
miRNA:   3'- -CCGUUCUGcCCGC-AGUGCUAGcuCCu -5'
25524 3' -55.4 NC_005337.1 + 11320 0.68 0.855709
Target:  5'- uGGUGuuguuGGCGGcGuCGUCGCGGcCGGGGAu -3'
miRNA:   3'- -CCGUu----CUGCC-C-GCAGUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 1044 0.68 0.855709
Target:  5'- cGgGAGGCGGGCGgCGgGAggccggCGGGGGc -3'
miRNA:   3'- cCgUUCUGCCCGCaGUgCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 114910 0.67 0.870827
Target:  5'- -uCGAGcAgGGGCaGUgCAUGAUCGGGGAg -3'
miRNA:   3'- ccGUUC-UgCCCG-CA-GUGCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 94689 0.67 0.878069
Target:  5'- aGGCGGGGCGcaauacucGGCGUCcACGAggaCGAGu- -3'
miRNA:   3'- -CCGUUCUGC--------CCGCAG-UGCUa--GCUCcu -5'
25524 3' -55.4 NC_005337.1 + 73865 0.67 0.885091
Target:  5'- aGGagaAGGGCGGGC-UCAUGGccacggacaUCGAGGu -3'
miRNA:   3'- -CCg--UUCUGCCCGcAGUGCU---------AGCUCCu -5'
25524 3' -55.4 NC_005337.1 + 58213 0.67 0.89189
Target:  5'- cGG-AAGAUGGGCGagCugGAggaggccgcCGAGGAg -3'
miRNA:   3'- -CCgUUCUGCCCGCa-GugCUa--------GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 9707 0.66 0.910908
Target:  5'- aGCGcuuGGACGcGGCcUCGCGcagCGGGGAg -3'
miRNA:   3'- cCGU---UCUGC-CCGcAGUGCua-GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 30645 0.66 0.910908
Target:  5'- uGGCGAGGgaGGcugccGCGUCGCGGgccuucCGGGGGu -3'
miRNA:   3'- -CCGUUCUg-CC-----CGCAGUGCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 16650 0.68 0.847844
Target:  5'- cGGCGGuGACGcGGCGgC-CGGUCGAGa- -3'
miRNA:   3'- -CCGUU-CUGC-CCGCaGuGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 93273 0.68 0.847844
Target:  5'- uGGCGAGGCcgggGGuGCGUCggcgccuggugGCGGUCGAGc- -3'
miRNA:   3'- -CCGUUCUG----CC-CGCAG-----------UGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 101255 0.69 0.778518
Target:  5'- cGCuGGACGGcGCGgacgcgaagaUCGCGGccaUCGAGGAc -3'
miRNA:   3'- cCGuUCUGCC-CGC----------AGUGCU---AGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 72361 0.72 0.660348
Target:  5'- --gGAGACGGaCGUCGaGAUCGGGGAc -3'
miRNA:   3'- ccgUUCUGCCcGCAGUgCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 50374 0.71 0.670531
Target:  5'- gGGCccGGGcACGGGCGcCugGcgCGGGGGc -3'
miRNA:   3'- -CCG--UUC-UGCCCGCaGugCuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 47673 0.71 0.670531
Target:  5'- cGGCAugcuGGCGGGCGUCcgcguGCGGUaCGAcGGc -3'
miRNA:   3'- -CCGUu---CUGCCCGCAG-----UGCUA-GCU-CCu -5'
25524 3' -55.4 NC_005337.1 + 993 0.71 0.680683
Target:  5'- cGGCGcgcggaGGGCGGGCGUCGCc-UgGAGGc -3'
miRNA:   3'- -CCGU------UCUGCCCGCAGUGcuAgCUCCu -5'
25524 3' -55.4 NC_005337.1 + 93338 0.71 0.690795
Target:  5'- cGGC--GGCGGGagGUCGaggaGGUCGAGGAc -3'
miRNA:   3'- -CCGuuCUGCCCg-CAGUg---CUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 13613 0.7 0.720802
Target:  5'- cGCcAGcCGGGCGUCGCcgcCGAGGGa -3'
miRNA:   3'- cCGuUCuGCCCGCAGUGcuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 84030 0.7 0.730665
Target:  5'- cGGCGGGACacaccGGCGgaggcgcgCACGAcgcccUCGGGGAg -3'
miRNA:   3'- -CCGUUCUGc----CCGCa-------GUGCU-----AGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 84101 0.69 0.778518
Target:  5'- cGGCcguccGGACGGGCGaaGCaGUCgGAGGAg -3'
miRNA:   3'- -CCGu----UCUGCCCGCagUGcUAG-CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.