miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 119330 1.09 0.000842
Target:  5'- uGCGCGAGGCCAUCCUGCGCAAGGCCUg -3'
miRNA:   3'- -CGCGCUCCGGUAGGACGCGUUCCGGA- -5'
25526 5' -60.5 NC_005337.1 + 122390 0.81 0.08797
Target:  5'- uGCGCGAGGUCGUgCUGCGCGGcGGCg- -3'
miRNA:   3'- -CGCGCUCCGGUAgGACGCGUU-CCGga -5'
25526 5' -60.5 NC_005337.1 + 52439 0.79 0.124557
Target:  5'- cGC-CGAGGCCAacgagccagcgaagcUCCcgGCGCAGGGCCa -3'
miRNA:   3'- -CGcGCUCCGGU---------------AGGa-CGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 36032 0.75 0.208772
Target:  5'- aGCGCGAGGuCCGaCgaGgGCGAGGCCc -3'
miRNA:   3'- -CGCGCUCC-GGUaGgaCgCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 46384 0.75 0.213912
Target:  5'- aGCGCGucaGCCAggUCCUGcCGCGAGGUCa -3'
miRNA:   3'- -CGCGCuc-CGGU--AGGAC-GCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 124540 0.75 0.218102
Target:  5'- cGCGCGcugcuucAGGCUcUCCuccccgcUGCGCGAGGCCg -3'
miRNA:   3'- -CGCGC-------UCCGGuAGG-------ACGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 91269 0.75 0.219691
Target:  5'- uGCGCGAGGCCAUCCUcucCGCcaaguucaacgucuGGCCc -3'
miRNA:   3'- -CGCGCUCCGGUAGGAc--GCGuu------------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 65990 0.74 0.252992
Target:  5'- gGUGCGAGGCCGUgcgucccgugggCgaGCGCGuguGGGCCa -3'
miRNA:   3'- -CGCGCUCCGGUA------------GgaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 101077 0.74 0.263329
Target:  5'- gGCGCGccccgccgucgggaGGGcCCGUCCgGCGCGGGGCa- -3'
miRNA:   3'- -CGCGC--------------UCC-GGUAGGaCGCGUUCCGga -5'
25526 5' -60.5 NC_005337.1 + 123654 0.73 0.277858
Target:  5'- gGCGCGAcGGUCGUCCUG-GCGccGCCg -3'
miRNA:   3'- -CGCGCU-CCGGUAGGACgCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 100282 0.73 0.277858
Target:  5'- cGCGCaaGAGGCgGUCCgUGCGCAccuuccuGGCCc -3'
miRNA:   3'- -CGCG--CUCCGgUAGG-ACGCGUu------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 77752 0.73 0.304632
Target:  5'- cGCcaCGAGGCCGUCUUgGCGCGgucgcggacguGGGCCa -3'
miRNA:   3'- -CGc-GCUCCGGUAGGA-CGCGU-----------UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 57277 0.72 0.318746
Target:  5'- cGCGCGGGGCCGgc--GCGCGcGGCUg -3'
miRNA:   3'- -CGCGCUCCGGUaggaCGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 52709 0.72 0.325985
Target:  5'- cGCGgaCGAGGCCuaCCUGCGCGAGcugcgcGCCg -3'
miRNA:   3'- -CGC--GCUCCGGuaGGACGCGUUC------CGGa -5'
25526 5' -60.5 NC_005337.1 + 54127 0.72 0.340826
Target:  5'- aGCGCGAcGGCCGcgCCgcGCGCAuGGCUc -3'
miRNA:   3'- -CGCGCU-CCGGUa-GGa-CGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 815 0.72 0.348428
Target:  5'- cCGCGGaGCCGUCC-GCGCGcgcGGGCCc -3'
miRNA:   3'- cGCGCUcCGGUAGGaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 815 0.72 0.348428
Target:  5'- cCGCGGaGCCGUCC-GCGCGcgcGGGCCc -3'
miRNA:   3'- cGCGCUcCGGUAGGaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 53034 0.71 0.363991
Target:  5'- uGUGCGGGaGCUG-CCgGCGCAAcGGCCUg -3'
miRNA:   3'- -CGCGCUC-CGGUaGGaCGCGUU-CCGGA- -5'
25526 5' -60.5 NC_005337.1 + 133583 0.71 0.363991
Target:  5'- cGCGCGAGcuucGCC-UCCgcGCGCAAgGGCCc -3'
miRNA:   3'- -CGCGCUC----CGGuAGGa-CGCGUU-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 133583 0.71 0.363991
Target:  5'- cGCGCGAGcuucGCC-UCCgcGCGCAAgGGCCc -3'
miRNA:   3'- -CGCGCUC----CGGuAGGa-CGCGUU-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.