miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 815 0.72 0.348428
Target:  5'- cCGCGGaGCCGUCC-GCGCGcgcGGGCCc -3'
miRNA:   3'- cGCGCUcCGGUAGGaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 815 0.72 0.348428
Target:  5'- cCGCGGaGCCGUCC-GCGCGcgcGGGCCc -3'
miRNA:   3'- cGCGCUcCGGUAGGaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 1042 0.68 0.533453
Target:  5'- cGCGgGAGGCgGgcg-GCGgGAGGCCg -3'
miRNA:   3'- -CGCgCUCCGgUaggaCGCgUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 1042 0.68 0.533453
Target:  5'- cGCGgGAGGCgGgcg-GCGgGAGGCCg -3'
miRNA:   3'- -CGCgCUCCGgUaggaCGCgUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 3517 0.67 0.603041
Target:  5'- uGCGCGAaGuCCA-CCUGCG--AGGCCa -3'
miRNA:   3'- -CGCGCUcC-GGUaGGACGCguUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 4110 0.71 0.388225
Target:  5'- cGCGCGcacGGCC-UCCgaaagcGCGCGAGcGCCa -3'
miRNA:   3'- -CGCGCu--CCGGuAGGa-----CGCGUUC-CGGa -5'
25526 5' -60.5 NC_005337.1 + 9856 0.67 0.613118
Target:  5'- cGCGCGgcguugcccAGGaCCAUCUcGCGCAGaccguugaacgcGGCCa -3'
miRNA:   3'- -CGCGC---------UCC-GGUAGGaCGCGUU------------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 9975 0.67 0.592984
Target:  5'- cGCGaCGAGGCCgcGUCCUcgGCcacgGCAGGGUUc -3'
miRNA:   3'- -CGC-GCUCCGG--UAGGA--CG----CGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 10440 0.66 0.673612
Target:  5'- uGCGCGGcGGUgcgcgCGUCgUGCGCcAGGaCCUc -3'
miRNA:   3'- -CGCGCU-CCG-----GUAGgACGCGuUCC-GGA- -5'
25526 5' -60.5 NC_005337.1 + 11375 0.66 0.643405
Target:  5'- aGCGCGcucGCCAUCggcgggcugaUGCGCcAGGGCCc -3'
miRNA:   3'- -CGCGCuc-CGGUAGg---------ACGCG-UUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 12046 0.68 0.563008
Target:  5'- gGCGUGcGGUCGUCCgGCGUgcGcGCCg -3'
miRNA:   3'- -CGCGCuCCGGUAGGaCGCGuuC-CGGa -5'
25526 5' -60.5 NC_005337.1 + 13988 0.68 0.523721
Target:  5'- aGCGUGccGGCCAUguaCUUGCGCGacAGGUCg -3'
miRNA:   3'- -CGCGCu-CCGGUA---GGACGCGU--UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 15730 0.66 0.683627
Target:  5'- cGCGCGAGGUCccacguGUCCUG-GCcgauGGCa- -3'
miRNA:   3'- -CGCGCUCCGG------UAGGACgCGuu--CCGga -5'
25526 5' -60.5 NC_005337.1 + 18322 0.67 0.603041
Target:  5'- aGCGCGuccauGGCCAUCUggugGUccgaGCAcGGGCCc -3'
miRNA:   3'- -CGCGCu----CCGGUAGGa---CG----CGU-UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 19584 0.66 0.673612
Target:  5'- cGCGCGAGGaucuccacugCGUCCaGCGgagaggcggccuCGAGGCCc -3'
miRNA:   3'- -CGCGCUCCg---------GUAGGaCGC------------GUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 22642 0.67 0.572961
Target:  5'- cCGCGAGGCC-UUCgGCGCGGacgcgcGGCUg -3'
miRNA:   3'- cGCGCUCCGGuAGGaCGCGUU------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 28501 0.66 0.673612
Target:  5'- gGCGCGcGGUCGcgcggCaCUGCGUggGGCa- -3'
miRNA:   3'- -CGCGCuCCGGUa----G-GACGCGuuCCGga -5'
25526 5' -60.5 NC_005337.1 + 30236 0.71 0.38003
Target:  5'- uGCGCGAGGagaCGUUCcGCGCGAuGGCg- -3'
miRNA:   3'- -CGCGCUCCg--GUAGGaCGCGUU-CCGga -5'
25526 5' -60.5 NC_005337.1 + 30261 0.68 0.563008
Target:  5'- gGCGCGggcAGGCgGUCCacgGCGCGcAGGUg- -3'
miRNA:   3'- -CGCGC---UCCGgUAGGa--CGCGU-UCCGga -5'
25526 5' -60.5 NC_005337.1 + 31908 0.69 0.457775
Target:  5'- aGCGCGGuGGCCAg---GUGCGcGGCCUc -3'
miRNA:   3'- -CGCGCU-CCGGUaggaCGCGUuCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.