miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 61905 0.69 0.503514
Target:  5'- cCGCGAcGGCCGUCC-GCGCGAucgcgcggaacuuGGCg- -3'
miRNA:   3'- cGCGCU-CCGGUAGGaCGCGUU-------------CCGga -5'
25526 5' -60.5 NC_005337.1 + 120983 0.71 0.396535
Target:  5'- cUGCGAGcccGCCcUCCUGCGCAucGCCc -3'
miRNA:   3'- cGCGCUC---CGGuAGGACGCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 124776 0.7 0.422139
Target:  5'- -gGUGAcGGCCAUCgagcuCUGCGCGcagauGGGCCg -3'
miRNA:   3'- cgCGCU-CCGGUAG-----GACGCGU-----UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 131081 0.7 0.422139
Target:  5'- aGCGCGAGuuCGUggUCUGCGCGcuGGCCa -3'
miRNA:   3'- -CGCGCUCcgGUA--GGACGCGUu-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 51692 0.7 0.430892
Target:  5'- -gGCGAGGCCAgucuggCCUGCGac-GGCg- -3'
miRNA:   3'- cgCGCUCCGGUa-----GGACGCguuCCGga -5'
25526 5' -60.5 NC_005337.1 + 55239 0.69 0.466933
Target:  5'- cGCGCGuuccgucaucGGGCCGgauucgucgcUCUcggUGCGCGAGGUCg -3'
miRNA:   3'- -CGCGC----------UCCGGU----------AGG---ACGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 83947 0.69 0.466933
Target:  5'- gGCGgGuaccGGGCgGUCC-GCGCAGGGCa- -3'
miRNA:   3'- -CGCgC----UCCGgUAGGaCGCGUUCCGga -5'
25526 5' -60.5 NC_005337.1 + 109080 0.69 0.494011
Target:  5'- aGCGCGAcgaacauGGCCGcggCCgagGC-CAGGGCCa -3'
miRNA:   3'- -CGCGCU-------CCGGUa--GGa--CGcGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 131394 0.69 0.494957
Target:  5'- cCGCGGGGCCGUgaucguguucCCgcugGCGCGcGGCUc -3'
miRNA:   3'- cGCGCUCCGGUA----------GGa---CGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 103633 0.71 0.396535
Target:  5'- cGCGcCGcGcGCCAUCCucggcUGCGCGcAGGCCa -3'
miRNA:   3'- -CGC-GCuC-CGGUAGG-----ACGCGU-UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 133583 0.71 0.363991
Target:  5'- cGCGCGAGcuucGCC-UCCgcGCGCAAgGGCCc -3'
miRNA:   3'- -CGCGCUC----CGGuAGGa-CGCGUU-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 815 0.72 0.348428
Target:  5'- cCGCGGaGCCGUCC-GCGCGcgcGGGCCc -3'
miRNA:   3'- cGCGCUcCGGUAGGaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 52439 0.79 0.124557
Target:  5'- cGC-CGAGGCCAacgagccagcgaagcUCCcgGCGCAGGGCCa -3'
miRNA:   3'- -CGcGCUCCGGU---------------AGGa-CGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 36032 0.75 0.208772
Target:  5'- aGCGCGAGGuCCGaCgaGgGCGAGGCCc -3'
miRNA:   3'- -CGCGCUCC-GGUaGgaCgCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 46384 0.75 0.213912
Target:  5'- aGCGCGucaGCCAggUCCUGcCGCGAGGUCa -3'
miRNA:   3'- -CGCGCuc-CGGU--AGGAC-GCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 65990 0.74 0.252992
Target:  5'- gGUGCGAGGCCGUgcgucccgugggCgaGCGCGuguGGGCCa -3'
miRNA:   3'- -CGCGCUCCGGUA------------GgaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 100282 0.73 0.277858
Target:  5'- cGCGCaaGAGGCgGUCCgUGCGCAccuuccuGGCCc -3'
miRNA:   3'- -CGCG--CUCCGgUAGG-ACGCGUu------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 123654 0.73 0.277858
Target:  5'- gGCGCGAcGGUCGUCCUG-GCGccGCCg -3'
miRNA:   3'- -CGCGCU-CCGGUAGGACgCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 77752 0.73 0.304632
Target:  5'- cGCcaCGAGGCCGUCUUgGCGCGgucgcggacguGGGCCa -3'
miRNA:   3'- -CGc-GCUCCGGUAGGA-CGCGU-----------UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 52709 0.72 0.325985
Target:  5'- cGCGgaCGAGGCCuaCCUGCGCGAGcugcgcGCCg -3'
miRNA:   3'- -CGC--GCUCCGGuaGGACGCGUUC------CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.