miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 66179 0.74 0.473295
Target:  5'- aCGAcCACCGCCGC-GUCcgGGGCGAc- -3'
miRNA:   3'- -GUU-GUGGCGGCGuCGGuaCCUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 72463 0.74 0.473295
Target:  5'- --uCGCCGCCGCcauGCgCGUGGACGuGGa -3'
miRNA:   3'- guuGUGGCGGCGu--CG-GUACCUGCuUC- -5'
25527 3' -55.8 NC_005337.1 + 20155 0.74 0.473295
Target:  5'- -cACGCUGCCGCAgGCCGcGG-CGGAGg -3'
miRNA:   3'- guUGUGGCGGCGU-CGGUaCCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 17675 0.74 0.473295
Target:  5'- -cGCGCCGCacCGCGGCguugauggcgggCAUGGGCGAGGu -3'
miRNA:   3'- guUGUGGCG--GCGUCG------------GUACCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 118350 0.74 0.473295
Target:  5'- gGACguuCGgUGCAGCCAUGGACGAAa -3'
miRNA:   3'- gUUGug-GCgGCGUCGGUACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 97733 0.74 0.482856
Target:  5'- cCGGCGCCGCC-CAGCCGccggGGACGc-- -3'
miRNA:   3'- -GUUGUGGCGGcGUCGGUa---CCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 105097 0.73 0.49251
Target:  5'- gGGCGCCGCCGCGucuCCGgagcUGGACGAc- -3'
miRNA:   3'- gUUGUGGCGGCGUc--GGU----ACCUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 126866 0.73 0.502252
Target:  5'- gGACGCCGCUGCAccucugcguGCuCGUGG-CGAGGa -3'
miRNA:   3'- gUUGUGGCGGCGU---------CG-GUACCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 19061 0.73 0.511091
Target:  5'- gAGCugUGCCGCGGCCAcagcaggUGcGGCGAGu -3'
miRNA:   3'- gUUGugGCGGCGUCGGU-------AC-CUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 34066 0.73 0.531957
Target:  5'- gCGGCGCCgGCCGUcguagagcaGGCCGcGGAUGAAGu -3'
miRNA:   3'- -GUUGUGG-CGGCG---------UCGGUaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 133518 0.72 0.552109
Target:  5'- aCAugGCCGCCGUcgaGGCCGcGGGCGc-- -3'
miRNA:   3'- -GUugUGGCGGCG---UCGGUaCCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 133518 0.72 0.552109
Target:  5'- aCAugGCCGCCGUcgaGGCCGcGGGCGc-- -3'
miRNA:   3'- -GUugUGGCGGCG---UCGGUaCCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 34374 0.72 0.552109
Target:  5'- gAGCGCCGCCGCGGCgagccagaggagCGUGG-CGGu- -3'
miRNA:   3'- gUUGUGGCGGCGUCG------------GUACCuGCUuc -5'
25527 3' -55.8 NC_005337.1 + 43089 0.72 0.562272
Target:  5'- -cGCAUCGCgGC-GCCcgGGAUGAAGu -3'
miRNA:   3'- guUGUGGCGgCGuCGGuaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 12770 0.72 0.572484
Target:  5'- gAAgACCGCCGCuGCCGcgauGACGAGGc -3'
miRNA:   3'- gUUgUGGCGGCGuCGGUac--CUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 120166 0.72 0.582741
Target:  5'- -cACACCGCCgGCA-CCAUGGACa--- -3'
miRNA:   3'- guUGUGGCGG-CGUcGGUACCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 50312 0.72 0.593033
Target:  5'- -cGCGCCGCCGCuGCCcUGcGCGGAc -3'
miRNA:   3'- guUGUGGCGGCGuCGGuACcUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 96559 0.72 0.593033
Target:  5'- aGAUGCCGCUGCAG--GUGGACGAc- -3'
miRNA:   3'- gUUGUGGCGGCGUCggUACCUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 82647 0.72 0.593033
Target:  5'- gAGCGCCGaCCGCAGCuCGUcGcCGAAGa -3'
miRNA:   3'- gUUGUGGC-GGCGUCG-GUAcCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 1671 0.71 0.613699
Target:  5'- --cCGCCGCCGCGucguugcgguGCCcgGuGGCGAAGu -3'
miRNA:   3'- guuGUGGCGGCGU----------CGGuaC-CUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.