miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 119186 1.09 0.002632
Target:  5'- gCAACACCGCCGCAGCCAUGGACGAAGa -3'
miRNA:   3'- -GUUGUGGCGGCGUCGGUACCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 130955 0.81 0.197291
Target:  5'- gGACGCCGgCGUGGCCGUGGACGu-- -3'
miRNA:   3'- gUUGUGGCgGCGUCGGUACCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 62010 0.79 0.240675
Target:  5'- aCAGCAgCCGCCGCucgucgugGGCCAUGGcgucuACGAAGg -3'
miRNA:   3'- -GUUGU-GGCGGCG--------UCGGUACC-----UGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 42481 0.79 0.240675
Target:  5'- -cGCACCGCCGCcGCCGUGGagcgcGCGGAa -3'
miRNA:   3'- guUGUGGCGGCGuCGGUACC-----UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 11331 0.78 0.26521
Target:  5'- gCGGCGUCGUCGCGGCCggGGAUGGAGa -3'
miRNA:   3'- -GUUGUGGCGGCGUCGGuaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 117625 0.78 0.284913
Target:  5'- uCGACcgGCCGCCGCGucaccGCCGUGGugGAGc -3'
miRNA:   3'- -GUUG--UGGCGGCGU-----CGGUACCugCUUc -5'
25527 3' -55.8 NC_005337.1 + 48346 0.77 0.33533
Target:  5'- gGGCGCCggugaaccagGCCGCGGUgGUGGACGAGa -3'
miRNA:   3'- gUUGUGG----------CGGCGUCGgUACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 116604 0.76 0.366942
Target:  5'- uCAACGCCGCggUGCGGCgCGUGGACGu-- -3'
miRNA:   3'- -GUUGUGGCG--GCGUCG-GUACCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 17360 0.76 0.375159
Target:  5'- gCAGCACCGuCUGCcGCCcgGuGACGAAGu -3'
miRNA:   3'- -GUUGUGGC-GGCGuCGGuaC-CUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 58918 0.76 0.375159
Target:  5'- gGACuCCGgCGCGGCgacCGUGGACGAGGa -3'
miRNA:   3'- gUUGuGGCgGCGUCG---GUACCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 131986 0.75 0.398819
Target:  5'- cCGACcCCGCCGCAGCCugacccagugcGGGCGGAc -3'
miRNA:   3'- -GUUGuGGCGGCGUCGGua---------CCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 86246 0.75 0.400545
Target:  5'- gGGCACCGUCGCguugcgcacgaaGGCCGUGaACGAGGa -3'
miRNA:   3'- gUUGUGGCGGCG------------UCGGUACcUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 80499 0.75 0.418067
Target:  5'- -uGCGCC-CCGCGGCCggGGGCGGGc -3'
miRNA:   3'- guUGUGGcGGCGUCGGuaCCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 47579 0.75 0.427
Target:  5'- cCGACGa-GCCGCAGCCGcUGGGCGuGGg -3'
miRNA:   3'- -GUUGUggCGGCGUCGGU-ACCUGCuUC- -5'
25527 3' -55.8 NC_005337.1 + 81699 0.75 0.427
Target:  5'- cCAGCGCCGCCGC-GCCGUccccGCGGAGc -3'
miRNA:   3'- -GUUGUGGCGGCGuCGGUAcc--UGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 128214 0.75 0.427
Target:  5'- uGGCGCCGCuCGUGGCCGcGGGCGcGGa -3'
miRNA:   3'- gUUGUGGCG-GCGUCGGUaCCUGCuUC- -5'
25527 3' -55.8 NC_005337.1 + 92336 0.74 0.445202
Target:  5'- -cGCACCGUC-CAGCCGUccgacgacgaGGACGAGGa -3'
miRNA:   3'- guUGUGGCGGcGUCGGUA----------CCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 127580 0.74 0.445202
Target:  5'- gGAgGCgGgCGCAGCCGUGGACGucGc -3'
miRNA:   3'- gUUgUGgCgGCGUCGGUACCUGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 13938 0.74 0.46383
Target:  5'- gCAGCcCCGUCGUgcuCCAUGGGCGAGGg -3'
miRNA:   3'- -GUUGuGGCGGCGuc-GGUACCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 43446 0.74 0.46383
Target:  5'- gCGGCACC-CCGCGGUguuCGUGGACGGGu -3'
miRNA:   3'- -GUUGUGGcGGCGUCG---GUACCUGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.