miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 94437 0.66 0.883895
Target:  5'- gCAGCACU-CCGCAGaCCAgcaGGcCGGAGu -3'
miRNA:   3'- -GUUGUGGcGGCGUC-GGUa--CCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 97866 0.66 0.89353
Target:  5'- gGugGCCGCCGCcgugcucaaccgcauGGUCAUGGAgcaGAu- -3'
miRNA:   3'- gUugUGGCGGCG---------------UCGGUACCUg--CUuc -5'
25527 3' -55.8 NC_005337.1 + 15415 0.66 0.876738
Target:  5'- -uACAUgGCCaGCAGCCcgccgaacgGGACGAGa -3'
miRNA:   3'- guUGUGgCGG-CGUCGGua-------CCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 45555 0.66 0.88319
Target:  5'- uCGGCGCCGCCGUGGUgGUcuugaacGGACa--- -3'
miRNA:   3'- -GUUGUGGCGGCGUCGgUA-------CCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 68246 0.66 0.876738
Target:  5'- gAGCGCgGCCG--GCgCGUGGGCGAGc -3'
miRNA:   3'- gUUGUGgCGGCguCG-GUACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 21409 0.66 0.89752
Target:  5'- gCGGCAUCgucgacguggGCCGCGGCCAgcucGCGGAGc -3'
miRNA:   3'- -GUUGUGG----------CGGCGUCGGUacc-UGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 66760 0.66 0.88319
Target:  5'- ---aACCGCCGCacgcgcgGGCCGcUGGGCGu-- -3'
miRNA:   3'- guugUGGCGGCG-------UCGGU-ACCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 40537 0.66 0.869356
Target:  5'- ---aGCCGCCGCGGCgCGcGGugGu-- -3'
miRNA:   3'- guugUGGCGGCGUCG-GUaCCugCuuc -5'
25527 3' -55.8 NC_005337.1 + 35737 0.66 0.883895
Target:  5'- uGGCAa-GCaCGCGGCCGUcGGGCGGGc -3'
miRNA:   3'- gUUGUggCG-GCGUCGGUA-CCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 44216 0.66 0.876738
Target:  5'- ---gGCCGCCGCGGagc-GGGCGAGc -3'
miRNA:   3'- guugUGGCGGCGUCgguaCCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 21066 0.66 0.890824
Target:  5'- --gUACuCGCCGUAGUCGUGGuccCGGAc -3'
miRNA:   3'- guuGUG-GCGGCGUCGGUACCu--GCUUc -5'
25527 3' -55.8 NC_005337.1 + 64248 0.66 0.869356
Target:  5'- gCGGCGCUGCgGCGGCUcUGGGacccgggcgcgcCGGAGc -3'
miRNA:   3'- -GUUGUGGCGgCGUCGGuACCU------------GCUUC- -5'
25527 3' -55.8 NC_005337.1 + 122544 0.66 0.869356
Target:  5'- gCGACGCgCGCUGCAGCCgGUGcugcuccaGcCGAGGg -3'
miRNA:   3'- -GUUGUG-GCGGCGUCGG-UAC--------CuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 14253 0.66 0.883895
Target:  5'- uCAAUACCGUCGCaugcaGGCCcucccuuacgAUGG-CGGAGu -3'
miRNA:   3'- -GUUGUGGCGGCG-----UCGG----------UACCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 122201 0.66 0.883895
Target:  5'- --uCAUCGCCGCGGgCGcGGACGu-- -3'
miRNA:   3'- guuGUGGCGGCGUCgGUaCCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 120230 0.66 0.883895
Target:  5'- aCAGCAUCGCCgaGCAGUgCGUGuACGAAc -3'
miRNA:   3'- -GUUGUGGCGG--CGUCG-GUACcUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 124048 0.66 0.867853
Target:  5'- -cGCGCCuGCCGCGgcuggagcugccaauGCCccugccgaccaggauGUGGACGggGc -3'
miRNA:   3'- guUGUGG-CGGCGU---------------CGG---------------UACCUGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 5477 0.66 0.890141
Target:  5'- gCGGCACCGCuCGguGCgcacgccCGUGGAccCGAAu -3'
miRNA:   3'- -GUUGUGGCG-GCguCG-------GUACCU--GCUUc -5'
25527 3' -55.8 NC_005337.1 + 94640 0.66 0.89752
Target:  5'- -cGCGCCGCUGCGuGUaCAUGGcccGCGAGa -3'
miRNA:   3'- guUGUGGCGGCGU-CG-GUACC---UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 124009 0.66 0.890824
Target:  5'- gAACG-CGCCGCcGCCgAUGGaggcgccccGCGAAGg -3'
miRNA:   3'- gUUGUgGCGGCGuCGG-UACC---------UGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.