miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 863 0.7 0.686045
Target:  5'- gCAGCGCgGgCGCGGCC--GGGCGGAa -3'
miRNA:   3'- -GUUGUGgCgGCGUCGGuaCCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 863 0.7 0.686045
Target:  5'- gCAGCGCgGgCGCGGCC--GGGCGGAa -3'
miRNA:   3'- -GUUGUGgCgGCGUCGGuaCCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 1211 0.66 0.89752
Target:  5'- cCAcCGgCGCCGCGuaCGcGGACGAAGc -3'
miRNA:   3'- -GUuGUgGCGGCGUcgGUaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 1671 0.71 0.613699
Target:  5'- --cCGCCGCCGCGucguugcgguGCCcgGuGGCGAAGu -3'
miRNA:   3'- guuGUGGCGGCGU----------CGGuaC-CUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 2205 0.69 0.736517
Target:  5'- gGACGCgGgCGCGGCCcgGGccGCGAGc -3'
miRNA:   3'- gUUGUGgCgGCGUCGGuaCC--UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 5477 0.66 0.890141
Target:  5'- gCGGCACCGCuCGguGCgcacgccCGUGGAccCGAAu -3'
miRNA:   3'- -GUUGUGGCG-GCguCG-------GUACCU--GCUUc -5'
25527 3' -55.8 NC_005337.1 + 6571 0.71 0.644784
Target:  5'- cCAGCGCUG-CGCGGUCcggAUGGACGAGc -3'
miRNA:   3'- -GUUGUGGCgGCGUCGG---UACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 6702 0.66 0.890824
Target:  5'- aCGGCugCGCCcgccuccagcaGCAGCCGgacaacgcGGACGucGAGg -3'
miRNA:   3'- -GUUGugGCGG-----------CGUCGGUa-------CCUGC--UUC- -5'
25527 3' -55.8 NC_005337.1 + 7859 0.67 0.829299
Target:  5'- -cGCGCCGUCGCGcGCC--GGGCGGc- -3'
miRNA:   3'- guUGUGGCGGCGU-CGGuaCCUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 9071 0.68 0.765759
Target:  5'- -cGCACCGUCGCGGaCCAggcGGAacaucuucucgaCGGAGg -3'
miRNA:   3'- guUGUGGCGGCGUC-GGUa--CCU------------GCUUC- -5'
25527 3' -55.8 NC_005337.1 + 9365 0.67 0.860985
Target:  5'- gGACGCgCGCUGCgcguucgAGCCAgacGGCGAGGu -3'
miRNA:   3'- gUUGUG-GCGGCG-------UCGGUac-CUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 10008 0.68 0.793905
Target:  5'- cCGGCGCCGCCGUcGUCGUgcucgaucccGGAauCGGAGg -3'
miRNA:   3'- -GUUGUGGCGGCGuCGGUA----------CCU--GCUUC- -5'
25527 3' -55.8 NC_005337.1 + 10433 0.69 0.756121
Target:  5'- -cAUGCaCGCCGCGaacGCCG-GGACGGAGc -3'
miRNA:   3'- guUGUG-GCGGCGU---CGGUaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 10584 0.67 0.820705
Target:  5'- ---aGCCGCCGCAcggcGuCCGUGGACa--- -3'
miRNA:   3'- guugUGGCGGCGU----C-GGUACCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 11331 0.78 0.26521
Target:  5'- gCGGCGUCGUCGCGGCCggGGAUGGAGa -3'
miRNA:   3'- -GUUGUGGCGGCGUCGGuaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 11675 0.71 0.624057
Target:  5'- -cACGCCGCCGCccgcguGGuCCA-GGugGAAGu -3'
miRNA:   3'- guUGUGGCGGCG------UC-GGUaCCugCUUC- -5'
25527 3' -55.8 NC_005337.1 + 12770 0.72 0.572484
Target:  5'- gAAgACCGCCGCuGCCGcgauGACGAGGc -3'
miRNA:   3'- gUUgUGGCGGCGuCGGUac--CUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 13265 0.71 0.644784
Target:  5'- -cACACCaGCCGCAggcuGCCGaGGGCGAu- -3'
miRNA:   3'- guUGUGG-CGGCGU----CGGUaCCUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 13938 0.74 0.46383
Target:  5'- gCAGCcCCGUCGUgcuCCAUGGGCGAGGg -3'
miRNA:   3'- -GUUGuGGCGGCGuc-GGUACCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 14253 0.66 0.883895
Target:  5'- uCAAUACCGUCGCaugcaGGCCcucccuuacgAUGG-CGGAGu -3'
miRNA:   3'- -GUUGUGGCGGCG-----UCGG----------UACCuGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.