Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25527 | 5' | -53 | NC_005337.1 | + | 26798 | 0.69 | 0.887863 |
Target: 5'- cGGCcgUGCaGUGGAaggaguuCUUGGAGAUGgCg -3' miRNA: 3'- -CCGaaACGgUACCU-------GAGCCUCUACgG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 64493 | 0.69 | 0.895433 |
Target: 5'- uGCUcgGCCGUGGACcgcgucaCGGuGAaGCCc -3' miRNA: 3'- cCGAaaCGGUACCUGa------GCCuCUaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 82486 | 0.68 | 0.906552 |
Target: 5'- aGCUggUUGUCgAUGGACUCgucgcuguugcaguGGAaGAUGCCc -3' miRNA: 3'- cCGA--AACGG-UACCUGAG--------------CCU-CUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 38686 | 0.68 | 0.914572 |
Target: 5'- cGCUguucGCCGccUGGugUCGGcGGcgGCCc -3' miRNA: 3'- cCGAaa--CGGU--ACCugAGCC-UCuaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 118602 | 0.68 | 0.914572 |
Target: 5'- aGGCcuccGUCGUGGACU-GGAGGaucGCCg -3' miRNA: 3'- -CCGaaa-CGGUACCUGAgCCUCUa--CGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 51970 | 0.68 | 0.920453 |
Target: 5'- cGCUcggUGCCcuaccuggugGUGGACUCcaGGAaGAUGCUc -3' miRNA: 3'- cCGAa--ACGG----------UACCUGAG--CCU-CUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 51927 | 0.68 | 0.920453 |
Target: 5'- cGGCg--GCCAcgcuccUGGACUuccuguuggCGGuGGUGCUg -3' miRNA: 3'- -CCGaaaCGGU------ACCUGA---------GCCuCUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 19171 | 0.68 | 0.920453 |
Target: 5'- cGGCgacgGCCAccgGGugUCcGGAcuccacGAUGCCc -3' miRNA: 3'- -CCGaaa-CGGUa--CCugAG-CCU------CUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 88074 | 0.68 | 0.922735 |
Target: 5'- cGGCgagcucaugcagGCCGUGGACaUGGuGGAcGCCg -3' miRNA: 3'- -CCGaaa---------CGGUACCUGaGCC-UCUaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 4385 | 0.68 | 0.926082 |
Target: 5'- cGGCc--GCCAUGuGCagCGGcgAGAUGCCg -3' miRNA: 3'- -CCGaaaCGGUACcUGa-GCC--UCUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 118194 | 0.68 | 0.926082 |
Target: 5'- aGCUcgcGCCgGUGGGCgCGGAGccGCCc -3' miRNA: 3'- cCGAaa-CGG-UACCUGaGCCUCuaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 105528 | 0.67 | 0.931459 |
Target: 5'- cGGCc--GCCAUGGACgcgacuggaaCGGuGgcGCCa -3' miRNA: 3'- -CCGaaaCGGUACCUGa---------GCCuCuaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 78982 | 0.67 | 0.931459 |
Target: 5'- aGCgugUUGC---GGAUguagUCGGGGAUGCCg -3' miRNA: 3'- cCGa--AACGguaCCUG----AGCCUCUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 50434 | 0.67 | 0.936584 |
Target: 5'- cGCUUccGCCcgGGAUUCGG-GcgGCg -3' miRNA: 3'- cCGAAa-CGGuaCCUGAGCCuCuaCGg -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 10594 | 0.67 | 0.936584 |
Target: 5'- cGGCgu--CCGUGGACaccaugCGGAGGUGgUa -3' miRNA: 3'- -CCGaaacGGUACCUGa-----GCCUCUACgG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 88263 | 0.67 | 0.941458 |
Target: 5'- cGGCgc-GCCGgcGGGCgccgCGGAGGacaugGCCg -3' miRNA: 3'- -CCGaaaCGGUa-CCUGa---GCCUCUa----CGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 128814 | 0.67 | 0.95046 |
Target: 5'- cGGCUgcGCCcUGccCcCGGAGAUGCUc -3' miRNA: 3'- -CCGAaaCGGuACcuGaGCCUCUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 29025 | 0.67 | 0.95046 |
Target: 5'- cGGCcccaaGCCGUGGuggUGGGGgcGCCa -3' miRNA: 3'- -CCGaaa--CGGUACCugaGCCUCuaCGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 73898 | 0.67 | 0.95046 |
Target: 5'- aGGUc-UGCC-UGGGCa-GcGAGAUGCCg -3' miRNA: 3'- -CCGaaACGGuACCUGagC-CUCUACGG- -5' |
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25527 | 5' | -53 | NC_005337.1 | + | 10393 | 0.66 | 0.954594 |
Target: 5'- aGCUggUGCUcgGG-CUgUGGAGGUGCg -3' miRNA: 3'- cCGAa-ACGGuaCCuGA-GCCUCUACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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