miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 119229 1.15 0.001937
Target:  5'- uGGCUUUGCCAUGGACUCGGAGAUGCCg -3'
miRNA:   3'- -CCGAAACGGUACCUGAGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 98068 0.78 0.399967
Target:  5'- cGCUcaUGcCCGUGGuCUCGGAGAUGCa -3'
miRNA:   3'- cCGAa-AC-GGUACCuGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 35770 0.76 0.493262
Target:  5'- cGGCcUUGCCGcGGaACUCGGGGAcGUCg -3'
miRNA:   3'- -CCGaAACGGUaCC-UGAGCCUCUaCGG- -5'
25527 5' -53 NC_005337.1 + 127655 0.75 0.553774
Target:  5'- -----cGCCGUGGACgUGGAGGUGCUc -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 123569 0.75 0.584875
Target:  5'- -----gGCCGUGGACgCGGAG-UGCCg -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 80519 0.75 0.595324
Target:  5'- gGGCacgccgagGCCcgGGGCgCGGAGAUGUCc -3'
miRNA:   3'- -CCGaaa-----CGGuaCCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 10755 0.74 0.616298
Target:  5'- gGGC--UGC--UGGACUCGGGGAUGUa -3'
miRNA:   3'- -CCGaaACGguACCUGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 107162 0.72 0.74071
Target:  5'- cGCgugGCCAaGcGGCUgcUGGAGAUGCCg -3'
miRNA:   3'- cCGaaaCGGUaC-CUGA--GCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 68559 0.72 0.750662
Target:  5'- cGCUUUcGCCAUGG-CgCGGAGcucgGCCa -3'
miRNA:   3'- cCGAAA-CGGUACCuGaGCCUCua--CGG- -5'
25527 5' -53 NC_005337.1 + 57861 0.7 0.825492
Target:  5'- aGGCg--GCCAggGGACaccugugCGGAGcAUGCUg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa------GCCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 118497 0.7 0.837497
Target:  5'- cGGCggUGaCCGUGcgggugaccggcgucGugUCGGcGGAUGCCa -3'
miRNA:   3'- -CCGaaAC-GGUAC---------------CugAGCC-UCUACGG- -5'
25527 5' -53 NC_005337.1 + 68506 0.7 0.845837
Target:  5'- uGGCg--GCCGUGGgugcgcccgcgcucgGCUCuGAGcGUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACC---------------UGAGcCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 63327 0.7 0.850743
Target:  5'- aGGCgcUUGCuCGUGGACUuucCGGucauGGUGUCg -3'
miRNA:   3'- -CCGa-AACG-GUACCUGA---GCCu---CUACGG- -5'
25527 5' -53 NC_005337.1 + 62207 0.7 0.850743
Target:  5'- aGGUUcagUUuCCGgcgGGACaCGGGGAUGCCg -3'
miRNA:   3'- -CCGA---AAcGGUa--CCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 65145 0.69 0.86423
Target:  5'- aGGCggccGCCGUGGACcgCGGcucgcccgcagacgAGGUGCa -3'
miRNA:   3'- -CCGaaa-CGGUACCUGa-GCC--------------UCUACGg -5'
25527 5' -53 NC_005337.1 + 127586 0.69 0.866544
Target:  5'- gGGCgcaGCCGUGGACgUCGccGAGucGUGCUg -3'
miRNA:   3'- -CCGaaaCGGUACCUG-AGC--CUC--UACGG- -5'
25527 5' -53 NC_005337.1 + 42283 0.69 0.881456
Target:  5'- gGGCUggagaaGCuCAUGGGCgacgaggagaCGGAGGUGaCCg -3'
miRNA:   3'- -CCGAaa----CG-GUACCUGa---------GCCUCUAC-GG- -5'
25527 5' -53 NC_005337.1 + 103369 0.69 0.881456
Target:  5'- cGGCg-UGCUcgugAUGGACgCGGAGAUggagcGCCu -3'
miRNA:   3'- -CCGaaACGG----UACCUGaGCCUCUA-----CGG- -5'
25527 5' -53 NC_005337.1 + 77584 0.69 0.881456
Target:  5'- uGGCUcucguucucgaUGCUcuUGGACUCGGAGGucaUGCUc -3'
miRNA:   3'- -CCGAa----------ACGGu-ACCUGAGCCUCU---ACGG- -5'
25527 5' -53 NC_005337.1 + 76330 0.69 0.881456
Target:  5'- gGGCgugGCCGUGaGGCagaGGAGcuUGCCg -3'
miRNA:   3'- -CCGaaaCGGUAC-CUGag-CCUCu-ACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.