miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 2814 0.66 0.965574
Target:  5'- aGGCgcUGCUgcaGGACgucaCGGuAGAUGCUg -3'
miRNA:   3'- -CCGaaACGGua-CCUGa---GCC-UCUACGG- -5'
25527 5' -53 NC_005337.1 + 4385 0.68 0.926082
Target:  5'- cGGCc--GCCAUGuGCagCGGcgAGAUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACcUGa-GCC--UCUACGG- -5'
25527 5' -53 NC_005337.1 + 10393 0.66 0.954594
Target:  5'- aGCUggUGCUcgGG-CUgUGGAGGUGCg -3'
miRNA:   3'- cCGAa-ACGGuaCCuGA-GCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 10594 0.67 0.936584
Target:  5'- cGGCgu--CCGUGGACaccaugCGGAGGUGgUa -3'
miRNA:   3'- -CCGaaacGGUACCUGa-----GCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 10755 0.74 0.616298
Target:  5'- gGGC--UGC--UGGACUCGGGGAUGUa -3'
miRNA:   3'- -CCGaaACGguACCUGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 19171 0.68 0.920453
Target:  5'- cGGCgacgGCCAccgGGugUCcGGAcuccacGAUGCCc -3'
miRNA:   3'- -CCGaaa-CGGUa--CCugAG-CCU------CUACGG- -5'
25527 5' -53 NC_005337.1 + 26798 0.69 0.887863
Target:  5'- cGGCcgUGCaGUGGAaggaguuCUUGGAGAUGgCg -3'
miRNA:   3'- -CCGaaACGgUACCU-------GAGCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 29025 0.67 0.95046
Target:  5'- cGGCcccaaGCCGUGGuggUGGGGgcGCCa -3'
miRNA:   3'- -CCGaaa--CGGUACCugaGCCUCuaCGG- -5'
25527 5' -53 NC_005337.1 + 35770 0.76 0.493262
Target:  5'- cGGCcUUGCCGcGGaACUCGGGGAcGUCg -3'
miRNA:   3'- -CCGaAACGGUaCC-UGAGCCUCUaCGG- -5'
25527 5' -53 NC_005337.1 + 38686 0.68 0.914572
Target:  5'- cGCUguucGCCGccUGGugUCGGcGGcgGCCc -3'
miRNA:   3'- cCGAaa--CGGU--ACCugAGCC-UCuaCGG- -5'
25527 5' -53 NC_005337.1 + 39859 0.66 0.971475
Target:  5'- cGGCUUcggcaucagcgucUGCCGcUGGA--CGGAGcUGCUg -3'
miRNA:   3'- -CCGAA-------------ACGGU-ACCUgaGCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 42283 0.69 0.881456
Target:  5'- gGGCUggagaaGCuCAUGGGCgacgaggagaCGGAGGUGaCCg -3'
miRNA:   3'- -CCGAaa----CG-GUACCUGa---------GCCUCUAC-GG- -5'
25527 5' -53 NC_005337.1 + 47525 0.66 0.968778
Target:  5'- uGGCcaucgUGCCGgagcgGGACcucgUGGGccuGAUGCCg -3'
miRNA:   3'- -CCGaa---ACGGUa----CCUGa---GCCU---CUACGG- -5'
25527 5' -53 NC_005337.1 + 50434 0.67 0.936584
Target:  5'- cGCUUccGCCcgGGAUUCGG-GcgGCg -3'
miRNA:   3'- cCGAAa-CGGuaCCUGAGCCuCuaCGg -5'
25527 5' -53 NC_005337.1 + 51927 0.68 0.920453
Target:  5'- cGGCg--GCCAcgcuccUGGACUuccuguuggCGGuGGUGCUg -3'
miRNA:   3'- -CCGaaaCGGU------ACCUGA---------GCCuCUACGG- -5'
25527 5' -53 NC_005337.1 + 51970 0.68 0.920453
Target:  5'- cGCUcggUGCCcuaccuggugGUGGACUCcaGGAaGAUGCUc -3'
miRNA:   3'- cCGAa--ACGG----------UACCUGAG--CCU-CUACGG- -5'
25527 5' -53 NC_005337.1 + 57861 0.7 0.825492
Target:  5'- aGGCg--GCCAggGGACaccugugCGGAGcAUGCUg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa------GCCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 59874 0.66 0.958487
Target:  5'- uGGCggUGCCAga-GCccCGGAGAUGUa -3'
miRNA:   3'- -CCGaaACGGUaccUGa-GCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 62207 0.7 0.850743
Target:  5'- aGGUUcagUUuCCGgcgGGACaCGGGGAUGCCg -3'
miRNA:   3'- -CCGA---AAcGGUa--CCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 63327 0.7 0.850743
Target:  5'- aGGCgcUUGCuCGUGGACUuucCGGucauGGUGUCg -3'
miRNA:   3'- -CCGa-AACG-GUACCUGA---GCCu---CUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.