miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 50434 0.67 0.936584
Target:  5'- cGCUUccGCCcgGGAUUCGG-GcgGCg -3'
miRNA:   3'- cCGAAa-CGGuaCCUGAGCCuCuaCGg -5'
25527 5' -53 NC_005337.1 + 103369 0.69 0.881456
Target:  5'- cGGCg-UGCUcgugAUGGACgCGGAGAUggagcGCCu -3'
miRNA:   3'- -CCGaaACGG----UACCUGaGCCUCUA-----CGG- -5'
25527 5' -53 NC_005337.1 + 26798 0.69 0.887863
Target:  5'- cGGCcgUGCaGUGGAaggaguuCUUGGAGAUGgCg -3'
miRNA:   3'- -CCGaaACGgUACCU-------GAGCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 82486 0.68 0.906552
Target:  5'- aGCUggUUGUCgAUGGACUCgucgcuguugcaguGGAaGAUGCCc -3'
miRNA:   3'- cCGA--AACGG-UACCUGAG--------------CCU-CUACGG- -5'
25527 5' -53 NC_005337.1 + 38686 0.68 0.914572
Target:  5'- cGCUguucGCCGccUGGugUCGGcGGcgGCCc -3'
miRNA:   3'- cCGAaa--CGGU--ACCugAGCC-UCuaCGG- -5'
25527 5' -53 NC_005337.1 + 19171 0.68 0.920453
Target:  5'- cGGCgacgGCCAccgGGugUCcGGAcuccacGAUGCCc -3'
miRNA:   3'- -CCGaaa-CGGUa--CCugAG-CCU------CUACGG- -5'
25527 5' -53 NC_005337.1 + 51927 0.68 0.920453
Target:  5'- cGGCg--GCCAcgcuccUGGACUuccuguuggCGGuGGUGCUg -3'
miRNA:   3'- -CCGaaaCGGU------ACCUGA---------GCCuCUACGG- -5'
25527 5' -53 NC_005337.1 + 118194 0.68 0.926082
Target:  5'- aGCUcgcGCCgGUGGGCgCGGAGccGCCc -3'
miRNA:   3'- cCGAaa-CGG-UACCUGaGCCUCuaCGG- -5'
25527 5' -53 NC_005337.1 + 10594 0.67 0.936584
Target:  5'- cGGCgu--CCGUGGACaccaugCGGAGGUGgUa -3'
miRNA:   3'- -CCGaaacGGUACCUGa-----GCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 77584 0.69 0.881456
Target:  5'- uGGCUcucguucucgaUGCUcuUGGACUCGGAGGucaUGCUc -3'
miRNA:   3'- -CCGAa----------ACGGu-ACCUGAGCCUCU---ACGG- -5'
25527 5' -53 NC_005337.1 + 76330 0.69 0.881456
Target:  5'- gGGCgugGCCGUGaGGCagaGGAGcuUGCCg -3'
miRNA:   3'- -CCGaaaCGGUAC-CUGag-CCUCu-ACGG- -5'
25527 5' -53 NC_005337.1 + 127586 0.69 0.866544
Target:  5'- gGGCgcaGCCGUGGACgUCGccGAGucGUGCUg -3'
miRNA:   3'- -CCGaaaCGGUACCUG-AGC--CUC--UACGG- -5'
25527 5' -53 NC_005337.1 + 127655 0.75 0.553774
Target:  5'- -----cGCCGUGGACgUGGAGGUGCUc -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 123569 0.75 0.584875
Target:  5'- -----gGCCGUGGACgCGGAG-UGCCg -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 80519 0.75 0.595324
Target:  5'- gGGCacgccgagGCCcgGGGCgCGGAGAUGUCc -3'
miRNA:   3'- -CCGaaa-----CGGuaCCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 10755 0.74 0.616298
Target:  5'- gGGC--UGC--UGGACUCGGGGAUGUa -3'
miRNA:   3'- -CCGaaACGguACCUGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 57861 0.7 0.825492
Target:  5'- aGGCg--GCCAggGGACaccugugCGGAGcAUGCUg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa------GCCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 68506 0.7 0.845837
Target:  5'- uGGCg--GCCGUGGgugcgcccgcgcucgGCUCuGAGcGUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACC---------------UGAGcCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 62207 0.7 0.850743
Target:  5'- aGGUUcagUUuCCGgcgGGACaCGGGGAUGCCg -3'
miRNA:   3'- -CCGA---AAcGGUa--CCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 65145 0.69 0.86423
Target:  5'- aGGCggccGCCGUGGACcgCGGcucgcccgcagacgAGGUGCa -3'
miRNA:   3'- -CCGaaa-CGGUACCUGa-GCC--------------UCUACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.