miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 53930 0.66 0.674456
Target:  5'- -cGUGCugguucagguaucGCGCCUGGAaccgcuccgcgguGGCGUCuaGCu -3'
miRNA:   3'- cuCACG-------------CGCGGACCU-------------UCGCAGcgCGc -5'
25528 3' -60.3 NC_005337.1 + 10413 0.66 0.706179
Target:  5'- aGGUGCggcuGCGCCcaGGAggacgccugcgcGGCGgugCGCGCGu -3'
miRNA:   3'- cUCACG----CGCGGa-CCU------------UCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 96833 0.66 0.666462
Target:  5'- cGGGUGCGCaGCCgc--GGCGUgGCGUu -3'
miRNA:   3'- -CUCACGCG-CGGaccuUCGCAgCGCGc -5'
25528 3' -60.3 NC_005337.1 + 99665 0.66 0.666462
Target:  5'- ---cGCGCGgCUGGgcGCGcccguggCGUGCGa -3'
miRNA:   3'- cucaCGCGCgGACCuuCGCa------GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 99016 0.66 0.696319
Target:  5'- aGGUGCGCgcgGCCUGcGAGGCGcUgGaCGCc -3'
miRNA:   3'- cUCACGCG---CGGAC-CUUCGC-AgC-GCGc -5'
25528 3' -60.3 NC_005337.1 + 110104 0.66 0.654439
Target:  5'- cGAGgcUGCGCGUCcauuacugcgagGGAGacGCGUUGCGCa -3'
miRNA:   3'- -CUC--ACGCGCGGa-----------CCUU--CGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 42657 0.66 0.656445
Target:  5'- -cGUGCGUGUCUGuGgcGCGaacgaCGCGCu -3'
miRNA:   3'- cuCACGCGCGGAC-CuuCGCa----GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 124613 0.66 0.656445
Target:  5'- ---cGCGUgGCgCUGGAGGCaUUGCGCGc -3'
miRNA:   3'- cucaCGCG-CG-GACCUUCGcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 69239 0.66 0.666462
Target:  5'- ---cGCGCGCCUGGAcGUGcCG-GUGa -3'
miRNA:   3'- cucaCGCGCGGACCUuCGCaGCgCGC- -5'
25528 3' -60.3 NC_005337.1 + 105783 0.66 0.715978
Target:  5'- ---cGCGCGCCgc---GCGcCGCGCGg -3'
miRNA:   3'- cucaCGCGCGGaccuuCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 48002 0.66 0.715978
Target:  5'- --cUGCGUgGCCUGGAuccGCG-CGCuGCGg -3'
miRNA:   3'- cucACGCG-CGGACCUu--CGCaGCG-CGC- -5'
25528 3' -60.3 NC_005337.1 + 119404 0.66 0.69533
Target:  5'- gGAGU-CGCGUC-GGAAGUcucgcccGUCGCGCc -3'
miRNA:   3'- -CUCAcGCGCGGaCCUUCG-------CAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 125952 0.66 0.676452
Target:  5'- cGAG-GCGgGCgUGGgcGUGaaCGCGCGg -3'
miRNA:   3'- -CUCaCGCgCGgACCuuCGCa-GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 41798 0.66 0.686407
Target:  5'- aAGuUGCGCGCCgucGAGGCGUuCGCcaggaaccgGCGg -3'
miRNA:   3'- cUC-ACGCGCGGac-CUUCGCA-GCG---------CGC- -5'
25528 3' -60.3 NC_005337.1 + 118150 0.66 0.685413
Target:  5'- cGGUGC-CGCCaUGGAgguugacGGCGcCGCgGCGg -3'
miRNA:   3'- cUCACGcGCGG-ACCU-------UCGCaGCG-CGC- -5'
25528 3' -60.3 NC_005337.1 + 86836 0.66 0.676452
Target:  5'- -cGUGUGCGCCUGGcuGCGcaggaaGCaGCa -3'
miRNA:   3'- cuCACGCGCGGACCuuCGCag----CG-CGc -5'
25528 3' -60.3 NC_005337.1 + 120472 0.66 0.656445
Target:  5'- ---aGCGCGCgCUGGA----UCGCGCGg -3'
miRNA:   3'- cucaCGCGCG-GACCUucgcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 68313 0.66 0.706179
Target:  5'- ---cGCGUGCCcgaGGAgGGCGgcaCGCGCGu -3'
miRNA:   3'- cucaCGCGCGGa--CCU-UCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 101520 0.66 0.686407
Target:  5'- ---cGCGCGgCUGGAGGCcGUgGaCGUGa -3'
miRNA:   3'- cucaCGCGCgGACCUUCG-CAgC-GCGC- -5'
25528 3' -60.3 NC_005337.1 + 104180 0.66 0.706179
Target:  5'- aGGUGCGCGCgCUcaccgugcGcGAGCGcCGCGCc -3'
miRNA:   3'- cUCACGCGCG-GA--------CcUUCGCaGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.