miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 691 0.7 0.461331
Target:  5'- --uUGCGCGC--GGAGGCGaagcUCGCGCGc -3'
miRNA:   3'- cucACGCGCGgaCCUUCGC----AGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 691 0.7 0.461331
Target:  5'- --uUGCGCGC--GGAGGCGaagcUCGCGCGc -3'
miRNA:   3'- cucACGCGCGgaCCUUCGC----AGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 1001 0.74 0.262189
Target:  5'- gGAGggcggGCGuCGCCUGGAGGCcGUCgaauuucacuuuGCGCGg -3'
miRNA:   3'- -CUCa----CGC-GCGGACCUUCG-CAG------------CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 1001 0.74 0.262189
Target:  5'- gGAGggcggGCGuCGCCUGGAGGCcGUCgaauuucacuuuGCGCGg -3'
miRNA:   3'- -CUCa----CGC-GCGGACCUUCG-CAG------------CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 1156 0.68 0.546651
Target:  5'- gGGGaGCGCGCCggcGGAgcggcccgcuaGGCGgUGCGCGa -3'
miRNA:   3'- -CUCaCGCGCGGa--CCU-----------UCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 9355 0.69 0.527175
Target:  5'- ---cGCGuCGCCUGGAcGCGcgcUGCGCGu -3'
miRNA:   3'- cucaCGC-GCGGACCUuCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 9702 0.67 0.616267
Target:  5'- aGGGUa-GCGCUUGGAcGCGgccUCGCGCa -3'
miRNA:   3'- -CUCAcgCGCGGACCUuCGC---AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 10413 0.66 0.706179
Target:  5'- aGGUGCggcuGCGCCcaGGAggacgccugcgcGGCGgugCGCGCGu -3'
miRNA:   3'- cUCACG----CGCGGa-CCU------------UCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 10615 0.66 0.686407
Target:  5'- gGAGcgGCgGCGCCaGGAcgacCGUCGCGCc -3'
miRNA:   3'- -CUCa-CG-CGCGGaCCUuc--GCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 11941 0.67 0.636363
Target:  5'- cGGGcGCGCGCCgucgagGGAcGCGcauaUCGCGUc -3'
miRNA:   3'- -CUCaCGCGCGGa-----CCUuCGC----AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 13074 0.68 0.546651
Target:  5'- --cUGCGCGCgggcgcGGAAGCGgcgacgccaaUCGCGCGg -3'
miRNA:   3'- cucACGCGCGga----CCUUCGC----------AGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 13625 0.66 0.686407
Target:  5'- cGGGUGaagaGCaccucGUCUGGAAGCaggaCGCGCGg -3'
miRNA:   3'- -CUCACg---CG-----CGGACCUUCGca--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 13770 0.66 0.715978
Target:  5'- uGGUGCaGCGCCcgaacuUGaGGGCGUCGC-CGg -3'
miRNA:   3'- cUCACG-CGCGG------ACcUUCGCAGCGcGC- -5'
25528 3' -60.3 NC_005337.1 + 16805 0.73 0.287645
Target:  5'- -uGUGCGCGUCggcGGAGGCGUUGCuguacagaggGCGg -3'
miRNA:   3'- cuCACGCGCGGa--CCUUCGCAGCG----------CGC- -5'
25528 3' -60.3 NC_005337.1 + 17028 0.68 0.566351
Target:  5'- ---aGCGCGCaCUGcGucGCGUucCGCGCGg -3'
miRNA:   3'- cucaCGCGCG-GAC-CuuCGCA--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 21911 0.71 0.400087
Target:  5'- ---cGCGCGCUucaUGGAGGUGgcCGCGCGc -3'
miRNA:   3'- cucaCGCGCGG---ACCUUCGCa-GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 23925 0.71 0.400087
Target:  5'- ---cGCGCGCCcgcGGcAGGCG-CGCGCGa -3'
miRNA:   3'- cucaCGCGCGGa--CC-UUCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 25049 0.69 0.507963
Target:  5'- gGAGcugcUGCGCGCCgugcgGGcGGCGUucgucaagcUGCGCGa -3'
miRNA:   3'- -CUC----ACGCGCGGa----CCuUCGCA---------GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 25285 0.66 0.715978
Target:  5'- gGAGUucGCGCGCaC-GGcGGGCGggcCGCGCGu -3'
miRNA:   3'- -CUCA--CGCGCG-GaCC-UUCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 30230 0.68 0.566351
Target:  5'- cGAGcGUGCGCgaGGAGaCGUucCGCGCGa -3'
miRNA:   3'- -CUCaCGCGCGgaCCUUcGCA--GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.