miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 118916 1.09 0.00098
Target:  5'- cGAGUGCGCGCCUGGAAGCGUCGCGCGg -3'
miRNA:   3'- -CUCACGCGCGGACCUUCGCAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 110316 0.79 0.133296
Target:  5'- uGAGgGCGCGCCguucggcccggccgGGcGGCGUCGCGCGc -3'
miRNA:   3'- -CUCaCGCGCGGa-------------CCuUCGCAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 116133 0.78 0.149741
Target:  5'- gGAGcUGCGCGCCUGGggGCcgaacgaGCGCa -3'
miRNA:   3'- -CUC-ACGCGCGGACCuuCGcag----CGCGc -5'
25528 3' -60.3 NC_005337.1 + 86294 0.77 0.165518
Target:  5'- cAGUGCG-GCCUGGAcGCGUCcGCGCc -3'
miRNA:   3'- cUCACGCgCGGACCUuCGCAG-CGCGc -5'
25528 3' -60.3 NC_005337.1 + 99149 0.76 0.187329
Target:  5'- cGAGUGCGcCGCaCUGGGcguccGCGcCGCGCGg -3'
miRNA:   3'- -CUCACGC-GCG-GACCUu----CGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 38579 0.75 0.222088
Target:  5'- -cGUGCaCGCCaaGGAGGCGUgGCGCGa -3'
miRNA:   3'- cuCACGcGCGGa-CCUUCGCAgCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 112380 0.75 0.22748
Target:  5'- aAGcGCGCGuCCUGGAggAGCGcCGCGCa -3'
miRNA:   3'- cUCaCGCGC-GGACCU--UCGCaGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 1001 0.74 0.262189
Target:  5'- gGAGggcggGCGuCGCCUGGAGGCcGUCgaauuucacuuuGCGCGg -3'
miRNA:   3'- -CUCa----CGC-GCGGACCUUCG-CAG------------CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 38475 0.74 0.262189
Target:  5'- cGGUGCGCGCC-GGgcGCG-CGCGUc -3'
miRNA:   3'- cUCACGCGCGGaCCuuCGCaGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 1001 0.74 0.262189
Target:  5'- gGAGggcggGCGuCGCCUGGAGGCcGUCgaauuucacuuuGCGCGg -3'
miRNA:   3'- -CUCa----CGC-GCGGACCUUCG-CAG------------CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 89891 0.73 0.287645
Target:  5'- gGAGaGCGCGCUguucacgauguUGGAcGUGUCGCGCa -3'
miRNA:   3'- -CUCaCGCGCGG-----------ACCUuCGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 16805 0.73 0.287645
Target:  5'- -uGUGCGCGUCggcGGAGGCGUUGCuguacagaggGCGg -3'
miRNA:   3'- cuCACGCGCGGa--CCUUCGCAGCG----------CGC- -5'
25528 3' -60.3 NC_005337.1 + 97974 0.73 0.293634
Target:  5'- -cGUGCGCGCCauccgcgacaccgUGGccGCGuUCGCGCa -3'
miRNA:   3'- cuCACGCGCGG-------------ACCuuCGC-AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 95612 0.73 0.315005
Target:  5'- ---aGCGCGCCaUGGcGGCGUCcguggGCGCGg -3'
miRNA:   3'- cucaCGCGCGG-ACCuUCGCAG-----CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 109173 0.72 0.348844
Target:  5'- ---cGCGCGCCgcgccgcgcgggcGGAgcucGGCGUCGCGCa -3'
miRNA:   3'- cucaCGCGCGGa------------CCU----UCGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 109904 0.72 0.367501
Target:  5'- ---cGUGCGCgUGGAAgacGUGUCGCGUGg -3'
miRNA:   3'- cucaCGCGCGgACCUU---CGCAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 130162 0.71 0.375475
Target:  5'- ---cGCGCGCUUucGGAGGcCGUgCGCGCGg -3'
miRNA:   3'- cucaCGCGCGGA--CCUUC-GCA-GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 36613 0.71 0.383564
Target:  5'- ---cGCG-GCCUGGAGcGCG-CGCGCGa -3'
miRNA:   3'- cucaCGCgCGGACCUU-CGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 23925 0.71 0.400087
Target:  5'- ---cGCGCGCCcgcGGcAGGCG-CGCGCGa -3'
miRNA:   3'- cucaCGCGCGGa--CC-UUCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 21911 0.71 0.400087
Target:  5'- ---cGCGCGCUucaUGGAGGUGgcCGCGCGc -3'
miRNA:   3'- cucaCGCGCGG---ACCUUCGCa-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.