Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25528 | 5' | -54.2 | NC_005337.1 | + | 40044 | 0.66 | 0.955825 |
Target: 5'- cGUCGuCGCGGUGcgCCGaacCGGGgaccgguaccGCGCGg -3' miRNA: 3'- -CAGC-GCGCUAUaaGGU---GCCCa---------UGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 81016 | 0.66 | 0.955436 |
Target: 5'- -gCGCGCGAag-UCCgggcguggagaugGCGGGgaUGCGCa -3' miRNA: 3'- caGCGCGCUauaAGG-------------UGCCC--AUGCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 49109 | 0.66 | 0.951828 |
Target: 5'- -gUGCGCGAgGUcaucgacucgcUCCGCGGGaagcuCGCGc -3' miRNA: 3'- caGCGCGCUaUA-----------AGGUGCCCau---GCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 96810 | 0.66 | 0.951416 |
Target: 5'- -cCGUGgGucUGUUCUcggaccuGCGGGUGCGCa -3' miRNA: 3'- caGCGCgCu-AUAAGG-------UGCCCAUGCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 9753 | 0.66 | 0.947596 |
Target: 5'- -gCGCGCGucgg-CCGgcgcCGGGUugGCa -3' miRNA: 3'- caGCGCGCuauaaGGU----GCCCAugCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 75627 | 0.66 | 0.947596 |
Target: 5'- -gCGCGCGug--UCC-CGcGUGCGCGa -3' miRNA: 3'- caGCGCGCuauaAGGuGCcCAUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 50869 | 0.66 | 0.947596 |
Target: 5'- uGUCGCugauaaaccGCGAggacaugGUUUgGCGGGcGCGCGc -3' miRNA: 3'- -CAGCG---------CGCUa------UAAGgUGCCCaUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 31908 | 0.66 | 0.947596 |
Target: 5'- --aGCGCGGUGg-CCA--GGUGCGCGg -3' miRNA: 3'- cagCGCGCUAUaaGGUgcCCAUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 77766 | 0.66 | 0.947596 |
Target: 5'- -cCGCGCGccucggggUCCGCGGaGUugGgGa -3' miRNA: 3'- caGCGCGCuaua----AGGUGCC-CAugCgC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 39425 | 0.66 | 0.94628 |
Target: 5'- -aCGCGCGGgcgcccgcucgggCCGCGcucGGUGCGCa -3' miRNA: 3'- caGCGCGCUauaa---------GGUGC---CCAUGCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 105409 | 0.66 | 0.945837 |
Target: 5'- cUCGCGCGcgcugaucgCCGuCGGGUGCaucGCGg -3' miRNA: 3'- cAGCGCGCuauaa----GGU-GCCCAUG---CGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 75913 | 0.66 | 0.943126 |
Target: 5'- -gCGCGCGAag-UCCGCGaagaGCGCGg -3' miRNA: 3'- caGCGCGCUauaAGGUGCcca-UGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 126204 | 0.66 | 0.943126 |
Target: 5'- cGUCGCGCG----UCCuCGcGGU-CGCGg -3' miRNA: 3'- -CAGCGCGCuauaAGGuGC-CCAuGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 35872 | 0.66 | 0.943126 |
Target: 5'- -aCGCGCGGaa--CUGCGGGacgugUGCGCGg -3' miRNA: 3'- caGCGCGCUauaaGGUGCCC-----AUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 10246 | 0.66 | 0.943126 |
Target: 5'- -gCGCGCGGcc-UUCGCGGG-GCGCc -3' miRNA: 3'- caGCGCGCUauaAGGUGCCCaUGCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 127149 | 0.66 | 0.938414 |
Target: 5'- -cCGCGUGcUGaUCCGCGcGG-GCGCGg -3' miRNA: 3'- caGCGCGCuAUaAGGUGC-CCaUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 35708 | 0.66 | 0.933459 |
Target: 5'- --aGCGCGGgcuccgUCUACcGGUGCGUGg -3' miRNA: 3'- cagCGCGCUaua---AGGUGcCCAUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 41743 | 0.66 | 0.933459 |
Target: 5'- cUCGCGCaccgcgUCCAUGGGgcggccGCGCa -3' miRNA: 3'- cAGCGCGcuaua-AGGUGCCCa-----UGCGc -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 36982 | 0.67 | 0.92826 |
Target: 5'- cGUCGCucaugaucuccGCGGUcuccagCCGCGGGgACGUGg -3' miRNA: 3'- -CAGCG-----------CGCUAuaa---GGUGCCCaUGCGC- -5' |
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25528 | 5' | -54.2 | NC_005337.1 | + | 1189 | 0.67 | 0.92826 |
Target: 5'- -gUGCGCGAgcgcggCACGGGcGCGCa -3' miRNA: 3'- caGCGCGCUauaag-GUGCCCaUGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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