Results 21 - 40 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25531 | 5' | -54.2 | NC_005337.1 | + | 5447 | 0.73 | 0.6058 |
Target: 5'- uCGgGGCUaguUGACGUACCacacggugguGCGGCACCGc -3' miRNA: 3'- cGUgUCGA---ACUGCAUGG----------CGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 56456 | 0.73 | 0.616298 |
Target: 5'- aGCGCGGUgauggUGGCcagcgacCCGCGGCGCCAg -3' miRNA: 3'- -CGUGUCGa----ACUGcau----GGCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 89947 | 0.72 | 0.626808 |
Target: 5'- cGCGCGGauaaaGGCGcgGCCGCAGCACg- -3' miRNA: 3'- -CGUGUCgaa--CUGCa-UGGCGUCGUGgu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 17281 | 0.72 | 0.631014 |
Target: 5'- cGCACguugaAGCUgucgagGAUGUGCCcgcccuccucguccuGCAGCACCAc -3' miRNA: 3'- -CGUG-----UCGAa-----CUGCAUGG---------------CGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 133709 | 0.72 | 0.634168 |
Target: 5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3' miRNA: 3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 133709 | 0.72 | 0.634168 |
Target: 5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3' miRNA: 3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 74554 | 0.72 | 0.637322 |
Target: 5'- cGCGCGGCgcgUGAUGcugGCCGCgcGGCACgCGg -3' miRNA: 3'- -CGUGUCGa--ACUGCa--UGGCG--UCGUG-GU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 34885 | 0.72 | 0.637322 |
Target: 5'- uGCGCAGCaccggcagGugGUGCCGC-GCGuCCAc -3' miRNA: 3'- -CGUGUCGaa------CugCAUGGCGuCGU-GGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 118792 | 0.72 | 0.647833 |
Target: 5'- -gGCGGCgccGuCGUGCCGCGcGCGCCGu -3' miRNA: 3'- cgUGUCGaa-CuGCAUGGCGU-CGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 27199 | 0.72 | 0.647833 |
Target: 5'- cGCACAGCggcacccccUGGCGcGCCGCcGcCGCCAg -3' miRNA: 3'- -CGUGUCGa--------ACUGCaUGGCGuC-GUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 17592 | 0.72 | 0.65833 |
Target: 5'- gGC-CGGCUcgcccgcgGGCG-GCUGCAGCACCAu -3' miRNA: 3'- -CGuGUCGAa-------CUGCaUGGCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 11910 | 0.72 | 0.668804 |
Target: 5'- cGCACAuGCgcgUGGCGU-CCgauGCGGCACCc -3' miRNA: 3'- -CGUGU-CGa--ACUGCAuGG---CGUCGUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 38605 | 0.72 | 0.668804 |
Target: 5'- aGCGCAGCgugGGCGUGCUGgGGaACCc -3' miRNA: 3'- -CGUGUCGaa-CUGCAUGGCgUCgUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 118236 | 0.71 | 0.679248 |
Target: 5'- cGCGCGGCggcaGGC--GCCGCAGCGCg- -3' miRNA: 3'- -CGUGUCGaa--CUGcaUGGCGUCGUGgu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 131729 | 0.71 | 0.689651 |
Target: 5'- cGgGCAGCUccGCGUGCCGCAGaACUg -3' miRNA: 3'- -CgUGUCGAacUGCAUGGCGUCgUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 37153 | 0.71 | 0.693798 |
Target: 5'- cGCGCAGCUccgccaccgccgaGCGccACUGCGGCACCAg -3' miRNA: 3'- -CGUGUCGAac-----------UGCa-UGGCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 127859 | 0.71 | 0.696903 |
Target: 5'- cGCGCuGCUguGCGUGCacagucugguggcgCGCGGCGCCGg -3' miRNA: 3'- -CGUGuCGAacUGCAUG--------------GCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 69237 | 0.71 | 0.710295 |
Target: 5'- cGCGCGcGCcugGACGUGCCGguGaCGCUg -3' miRNA: 3'- -CGUGU-CGaa-CUGCAUGGCguC-GUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 5755 | 0.71 | 0.710295 |
Target: 5'- gGCACGGCggcgGGCGgcaGCCGC-GCgACCAc -3' miRNA: 3'- -CGUGUCGaa--CUGCa--UGGCGuCG-UGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 14420 | 0.71 | 0.710295 |
Target: 5'- -uGCcGCgcGACGUGCCGCcgcuGGCGCCGg -3' miRNA: 3'- cgUGuCGaaCUGCAUGGCG----UCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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