miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 131072 0.69 0.759554
Target:  5'- aGggCGaCGAGCGcGAGUUCGUGGucuGCg -3'
miRNA:   3'- -CaaGCaGCUCGUcCUCGAGCACCu--CG- -5'
25533 3' -55.4 NC_005337.1 + 130712 0.69 0.778594
Target:  5'- cGUcCG-CGuGCGuGGAGCUCGUcGAGCg -3'
miRNA:   3'- -CAaGCaGCuCGU-CCUCGAGCAcCUCG- -5'
25533 3' -55.4 NC_005337.1 + 127788 0.67 0.856617
Target:  5'- --gCGUgGuGCGGGuGCUgGUGGAcGCc -3'
miRNA:   3'- caaGCAgCuCGUCCuCGAgCACCU-CG- -5'
25533 3' -55.4 NC_005337.1 + 125498 0.71 0.679541
Target:  5'- -cUCGgcaUCGAGguGGAGgUCGUGcGGCu -3'
miRNA:   3'- caAGC---AGCUCguCCUCgAGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 124317 0.66 0.918072
Target:  5'- --cCGUCGcggcGCAGGcGCUCaUGGAcGCg -3'
miRNA:   3'- caaGCAGCu---CGUCCuCGAGcACCU-CG- -5'
25533 3' -55.4 NC_005337.1 + 123620 0.69 0.749856
Target:  5'- -cUCG-CGGGUgcuGAcGCUCGUGGAGCu -3'
miRNA:   3'- caAGCaGCUCGuc-CU-CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 122662 0.7 0.68978
Target:  5'- -cUCGUCGAGCAGGuGGCcCGccgGGuGUg -3'
miRNA:   3'- caAGCAGCUCGUCC-UCGaGCa--CCuCG- -5'
25533 3' -55.4 NC_005337.1 + 118079 0.67 0.87916
Target:  5'- -gUUGUaGAGCuccucGGGGCUCuccggcgcgugGUGGAGCa -3'
miRNA:   3'- caAGCAgCUCGu----CCUCGAG-----------CACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 116111 1.11 0.001969
Target:  5'- aGUUCGUCGAGCAGGAGCUCGUGGAGCu -3'
miRNA:   3'- -CAAGCAGCUCGUCCUCGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 114909 0.66 0.918072
Target:  5'- ----uUCGAGCAGGGGCagugcaugaUCGgGGAGa -3'
miRNA:   3'- caagcAGCUCGUCCUCG---------AGCaCCUCg -5'
25533 3' -55.4 NC_005337.1 + 113126 0.67 0.870378
Target:  5'- --gCGUCGAGCAGGAcgcgcugcgguacguGCUguucgcggugcgcugCGUGGcGGCc -3'
miRNA:   3'- caaGCAGCUCGUCCU---------------CGA---------------GCACC-UCG- -5'
25533 3' -55.4 NC_005337.1 + 108885 0.67 0.848679
Target:  5'- -gUCGUCGAcggcggcgGCAGcGAGCgCGUG-AGCa -3'
miRNA:   3'- caAGCAGCU--------CGUC-CUCGaGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 106255 0.68 0.797098
Target:  5'- --gCGgcaggCGAuGCAGG-GCagCGUGGAGCa -3'
miRNA:   3'- caaGCa----GCU-CGUCCuCGa-GCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 105476 0.68 0.831364
Target:  5'- -gUCGUgcugcggcgcaUGAGCaagauccGGGAGUUCGUGGcGCa -3'
miRNA:   3'- caAGCA-----------GCUCG-------UCCUCGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 100237 0.7 0.710101
Target:  5'- --cCGUCGAcgGCA--AGCUCGUGGAGg -3'
miRNA:   3'- caaGCAGCU--CGUccUCGAGCACCUCg -5'
25533 3' -55.4 NC_005337.1 + 98975 0.67 0.864347
Target:  5'- cUUCGacuccgCGAGCGGG-GCcgagGUGGAGCc -3'
miRNA:   3'- cAAGCa-----GCUCGUCCuCGag--CACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 98033 0.71 0.638276
Target:  5'- --cCGaCGGGCuGGGGUUCGUccgGGAGCg -3'
miRNA:   3'- caaGCaGCUCGuCCUCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 95887 0.72 0.607244
Target:  5'- -aUCGUCuAGCAGGGcGCUCGUGcucgcGGCg -3'
miRNA:   3'- caAGCAGcUCGUCCU-CGAGCACc----UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.