miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 3' -56.1 NC_005337.1 + 121008 0.66 0.884836
Target:  5'- gCCCU-CGGCAgccuGCGgcugguguguggCAUCCUGCGGu- -3'
miRNA:   3'- -GGGAgGCCGU----UGCa-----------GUAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 1309 0.66 0.884836
Target:  5'- gUCCaUCCGGCGGCG-CAggagguccagcgCgCUGCAGAg -3'
miRNA:   3'- -GGG-AGGCCGUUGCaGUa-----------G-GACGUCUa -5'
25534 3' -56.1 NC_005337.1 + 9784 0.66 0.87916
Target:  5'- gCCUCCucgaugaacagGGCGGCGUUcaccauGUCCaggGCGGAUg -3'
miRNA:   3'- gGGAGG-----------CCGUUGCAG------UAGGa--CGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 50200 0.66 0.871863
Target:  5'- aCCCUCUGGCucCGcCGcCCUGCGc-- -3'
miRNA:   3'- -GGGAGGCCGuuGCaGUaGGACGUcua -5'
25534 3' -56.1 NC_005337.1 + 43839 0.66 0.856617
Target:  5'- gCCUCCGcGC-ACGaCcUCCUGCAGu- -3'
miRNA:   3'- gGGAGGC-CGuUGCaGuAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 46926 0.66 0.856617
Target:  5'- aCCUCgaGGaCAACGUCAUCCgGCu--- -3'
miRNA:   3'- gGGAGg-CC-GUUGCAGUAGGaCGucua -5'
25534 3' -56.1 NC_005337.1 + 124947 0.66 0.856617
Target:  5'- uCCCUCCGGacgcagcuCGGCuGUCGUCCgUGCGu-- -3'
miRNA:   3'- -GGGAGGCC--------GUUG-CAGUAGG-ACGUcua -5'
25534 3' -56.1 NC_005337.1 + 39604 0.66 0.855833
Target:  5'- gCCCUUCGGCGggcgggaGCGgaUCGUCUcGCGGGc -3'
miRNA:   3'- -GGGAGGCCGU-------UGC--AGUAGGaCGUCUa -5'
25534 3' -56.1 NC_005337.1 + 7357 0.67 0.84054
Target:  5'- gCCUCCaGCAGCGUCucgacgauGUCCgcGCAGu- -3'
miRNA:   3'- gGGAGGcCGUUGCAG--------UAGGa-CGUCua -5'
25534 3' -56.1 NC_005337.1 + 110633 0.67 0.832208
Target:  5'- uCCCUCCGGaCGACGcUCucgucggcgaaGUCgUaGCAGAUg -3'
miRNA:   3'- -GGGAGGCC-GUUGC-AG-----------UAGgA-CGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 18856 0.67 0.832208
Target:  5'- uCCCggacggCCGGCGagACGgCGUCCUcggaGCGGAg -3'
miRNA:   3'- -GGGa-----GGCCGU--UGCaGUAGGA----CGUCUa -5'
25534 3' -56.1 NC_005337.1 + 38697 0.67 0.823689
Target:  5'- gCCUggugUCGGCGGCGgcccgUCGUCCUGaCGGGg -3'
miRNA:   3'- -GGGa---GGCCGUUGC-----AGUAGGAC-GUCUa -5'
25534 3' -56.1 NC_005337.1 + 58464 0.67 0.814992
Target:  5'- aCCUCCGcCGACGUC-UCgCUGCuGAc -3'
miRNA:   3'- gGGAGGCcGUUGCAGuAG-GACGuCUa -5'
25534 3' -56.1 NC_005337.1 + 130449 0.67 0.814992
Target:  5'- uCCCUCCGaGCu-CGUCGaCCUGguGc- -3'
miRNA:   3'- -GGGAGGC-CGuuGCAGUaGGACguCua -5'
25534 3' -56.1 NC_005337.1 + 50237 0.67 0.806126
Target:  5'- gCUUUCCGGCAGCG-CA-CCaugGCGGAc -3'
miRNA:   3'- -GGGAGGCCGUUGCaGUaGGa--CGUCUa -5'
25534 3' -56.1 NC_005337.1 + 70901 0.67 0.806126
Target:  5'- gCCUCCGGaagccACGUCcugGUUCUGCAGc- -3'
miRNA:   3'- gGGAGGCCgu---UGCAG---UAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 19996 0.68 0.797098
Target:  5'- gUCCUCgGGCAGCa-CGUgCUGCGGGc -3'
miRNA:   3'- -GGGAGgCCGUUGcaGUAgGACGUCUa -5'
25534 3' -56.1 NC_005337.1 + 1358 0.68 0.797098
Target:  5'- -aCUCCGcGCucGCGUCAUCUgagcGCGGGUa -3'
miRNA:   3'- ggGAGGC-CGu-UGCAGUAGGa---CGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 122340 0.68 0.778594
Target:  5'- gUCUCCGGCcgggacGACGUCGgcaaCCUGCuGGg -3'
miRNA:   3'- gGGAGGCCG------UUGCAGUa---GGACGuCUa -5'
25534 3' -56.1 NC_005337.1 + 107699 0.68 0.778594
Target:  5'- uCCC-CCGGCGACGUCGUCaC-GCu--- -3'
miRNA:   3'- -GGGaGGCCGUUGCAGUAG-GaCGucua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.