Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25535 | 3' | -64.7 | NC_005337.1 | + | 115417 | 0.91 | 0.01012 |
Target: 5'- gGACGCCGUCU-CgCCGGCCGUCCGGGAg -3' miRNA: 3'- -CUGCGGCAGAcG-GGCCGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 110322 | 0.73 | 0.184846 |
Target: 5'- cGCGCCGUUcgGCCCGGCCGggCGGc- -3' miRNA: 3'- cUGCGGCAGa-CGGGCCGGCagGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 84115 | 0.72 | 0.207944 |
Target: 5'- -uCGCCGUCUGuUUCGaGUCGUUCGGGAg -3' miRNA: 3'- cuGCGGCAGAC-GGGC-CGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 41124 | 0.72 | 0.23891 |
Target: 5'- cGugGUCGUCUGaguCCaCGGCgagacgcgCGUCCGGGAc -3' miRNA: 3'- -CugCGGCAGAC---GG-GCCG--------GCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 42130 | 0.7 | 0.279804 |
Target: 5'- gGACGgCG-CUgGCCCgcGGCgCGUCCGGGGu -3' miRNA: 3'- -CUGCgGCaGA-CGGG--CCG-GCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 23830 | 0.7 | 0.28608 |
Target: 5'- --aGCCG-CUGUUCaGCCGUCUGGGGa -3' miRNA: 3'- cugCGGCaGACGGGcCGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 97730 | 0.7 | 0.305575 |
Target: 5'- -uCGCCGgcgCcGCCCaGCCG-CCGGGGa -3' miRNA: 3'- cuGCGGCa--GaCGGGcCGGCaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 6668 | 0.7 | 0.312296 |
Target: 5'- aACGCCGUCUGUCCGGCguCGUUuugaCGGu- -3' miRNA: 3'- cUGCGGCAGACGGGCCG--GCAG----GCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 76244 | 0.69 | 0.326072 |
Target: 5'- -cCGCCGUCgaagagcgcgGCCUGGCCGagcacgcCCGGGc -3' miRNA: 3'- cuGCGGCAGa---------CGGGCCGGCa------GGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 82378 | 0.69 | 0.333127 |
Target: 5'- cGGCGCCGaggGCCUcGUCGUCgGGGAg -3' miRNA: 3'- -CUGCGGCagaCGGGcCGGCAGgCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 2517 | 0.69 | 0.333127 |
Target: 5'- -cUGCCGcaccUCggagGCCCGGaCGUCCGGGc -3' miRNA: 3'- cuGCGGC----AGa---CGGGCCgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 118794 | 0.69 | 0.347572 |
Target: 5'- cGGCGCCGUCgUGCCgCGcgcGCCGUCgGuGGc -3' miRNA: 3'- -CUGCGGCAG-ACGG-GC---CGGCAGgC-CCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 89133 | 0.69 | 0.35496 |
Target: 5'- uGGCGCCGggcgcgacuagCUGCCCGa-CGUCUGGGu -3' miRNA: 3'- -CUGCGGCa----------GACGGGCcgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 66061 | 0.69 | 0.361704 |
Target: 5'- gGACGCCGUCaggcggGCCCGcagcggcGCCc-CCGGGGc -3' miRNA: 3'- -CUGCGGCAGa-----CGGGC-------CGGcaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 99284 | 0.68 | 0.375456 |
Target: 5'- --gGCCGUCUGCCUGGCgcggcgcggcguucCGcagcgCCGGGu -3' miRNA: 3'- cugCGGCAGACGGGCCG--------------GCa----GGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 92875 | 0.68 | 0.377006 |
Target: 5'- gGACGCCGgacgucaUCUGCCCGcGCgCGguugCCGGc- -3' miRNA: 3'- -CUGCGGC-------AGACGGGC-CG-GCa---GGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 37894 | 0.68 | 0.377782 |
Target: 5'- -cCGCCGcCUGCUCGGgCGcgaCCGGGu -3' miRNA: 3'- cuGCGGCaGACGGGCCgGCa--GGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 5809 | 0.68 | 0.385606 |
Target: 5'- cACGCgGUCU-CCCGcGCCGgUCCGGcGGu -3' miRNA: 3'- cUGCGgCAGAcGGGC-CGGC-AGGCC-CU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 43339 | 0.68 | 0.393536 |
Target: 5'- -uCGCCGaC-GCgCUGGCCG-CCGGGAa -3' miRNA: 3'- cuGCGGCaGaCG-GGCCGGCaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 29127 | 0.68 | 0.409709 |
Target: 5'- aGCGCCagcagcaccauGUCgGCgaCGGCCGUCCGGa- -3' miRNA: 3'- cUGCGG-----------CAGaCGg-GCCGGCAGGCCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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