Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25535 | 3' | -64.7 | NC_005337.1 | + | 2517 | 0.69 | 0.333127 |
Target: 5'- -cUGCCGcaccUCggagGCCCGGaCGUCCGGGc -3' miRNA: 3'- cuGCGGC----AGa---CGGGCCgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 5809 | 0.68 | 0.385606 |
Target: 5'- cACGCgGUCU-CCCGcGCCGgUCCGGcGGu -3' miRNA: 3'- cUGCGgCAGAcGGGC-CGGC-AGGCC-CU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 5833 | 0.66 | 0.514666 |
Target: 5'- aGAgGUCGUa--CCCGGCCGcCCGcGGGg -3' miRNA: 3'- -CUgCGGCAgacGGGCCGGCaGGC-CCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 6668 | 0.7 | 0.312296 |
Target: 5'- aACGCCGUCUGUCCGGCguCGUUuugaCGGu- -3' miRNA: 3'- cUGCGGCAGACGGGCCG--GCAG----GCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 9980 | 0.67 | 0.434728 |
Target: 5'- cGAgGCCGcguccUCgGCCaCGGCaggguucucguCGUCCGGGAc -3' miRNA: 3'- -CUgCGGC-----AGaCGG-GCCG-----------GCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 23830 | 0.7 | 0.28608 |
Target: 5'- --aGCCG-CUGUUCaGCCGUCUGGGGa -3' miRNA: 3'- cugCGGCaGACGGGcCGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 29127 | 0.68 | 0.409709 |
Target: 5'- aGCGCCagcagcaccauGUCgGCgaCGGCCGUCCGGa- -3' miRNA: 3'- cUGCGG-----------CAGaCGg-GCCGGCAGGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 29760 | 0.67 | 0.451891 |
Target: 5'- cGGgGUCGUCcaaCCGGgCGUCCGGGu -3' miRNA: 3'- -CUgCGGCAGacgGGCCgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 37894 | 0.68 | 0.377782 |
Target: 5'- -cCGCCGcCUGCUCGGgCGcgaCCGGGu -3' miRNA: 3'- cuGCGGCaGACGGGCCgGCa--GGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 38682 | 0.66 | 0.523933 |
Target: 5'- cGCGCUG-CUGCacCCGGCCGaccCCGGa- -3' miRNA: 3'- cUGCGGCaGACG--GGCCGGCa--GGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 38969 | 0.66 | 0.514666 |
Target: 5'- cGGCGcCCGagUGCgcgugcgucaCCGGCCGggcgCUGGGGa -3' miRNA: 3'- -CUGC-GGCagACG----------GGCCGGCa---GGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 41124 | 0.72 | 0.23891 |
Target: 5'- cGugGUCGUCUGaguCCaCGGCgagacgcgCGUCCGGGAc -3' miRNA: 3'- -CugCGGCAGAC---GG-GCCG--------GCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 42130 | 0.7 | 0.279804 |
Target: 5'- gGACGgCG-CUgGCCCgcGGCgCGUCCGGGGu -3' miRNA: 3'- -CUGCgGCaGA-CGGG--CCG-GCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 43339 | 0.68 | 0.393536 |
Target: 5'- -uCGCCGaC-GCgCUGGCCG-CCGGGAa -3' miRNA: 3'- cuGCGGCaGaCG-GGCCGGCaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 46674 | 0.66 | 0.47831 |
Target: 5'- cGCGCagcaGUC-GCCCGaGCgGcgCCGGGAg -3' miRNA: 3'- cUGCGg---CAGaCGGGC-CGgCa-GGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 54230 | 0.67 | 0.46061 |
Target: 5'- aGGCGuaGaUCUccucGUCCGGCgCGUCCGGGc -3' miRNA: 3'- -CUGCggC-AGA----CGGGCCG-GCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 57393 | 0.67 | 0.425451 |
Target: 5'- --aGCUG-CUGCCCGagauuuccgccgaGCCGUCCGGa- -3' miRNA: 3'- cugCGGCaGACGGGC-------------CGGCAGGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 64512 | 0.66 | 0.47831 |
Target: 5'- aGCG-CGUacaugGCCaCGGCCGUCCuGGAg -3' miRNA: 3'- cUGCgGCAga---CGG-GCCGGCAGGcCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 65772 | 0.67 | 0.434728 |
Target: 5'- uGACGCCGgcgCUGUCCGcGCCc-CCGGu- -3' miRNA: 3'- -CUGCGGCa--GACGGGC-CGGcaGGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 66061 | 0.69 | 0.361704 |
Target: 5'- gGACGCCGUCaggcggGCCCGcagcggcGCCc-CCGGGGc -3' miRNA: 3'- -CUGCGGCAGa-----CGGGC-------CGGcaGGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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