miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25535 3' -64.7 NC_005337.1 + 5833 0.66 0.514666
Target:  5'- aGAgGUCGUa--CCCGGCCGcCCGcGGGg -3'
miRNA:   3'- -CUgCGGCAgacGGGCCGGCaGGC-CCU- -5'
25535 3' -64.7 NC_005337.1 + 65772 0.67 0.434728
Target:  5'- uGACGCCGgcgCUGUCCGcGCCc-CCGGu- -3'
miRNA:   3'- -CUGCGGCa--GACGGGC-CGGcaGGCCcu -5'
25535 3' -64.7 NC_005337.1 + 9980 0.67 0.434728
Target:  5'- cGAgGCCGcguccUCgGCCaCGGCaggguucucguCGUCCGGGAc -3'
miRNA:   3'- -CUgCGGC-----AGaCGG-GCCG-----------GCAGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 68206 0.67 0.451891
Target:  5'- gGGCGCCGcugCggGCCCGccugacGgCGUCCGGGu -3'
miRNA:   3'- -CUGCGGCa--Ga-CGGGC------CgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 54230 0.67 0.46061
Target:  5'- aGGCGuaGaUCUccucGUCCGGCgCGUCCGGGc -3'
miRNA:   3'- -CUGCggC-AGA----CGGGCCG-GCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 74646 0.67 0.46061
Target:  5'- gGGCGCCG-CUGCCCGGggagaCC-UUCGuGGAc -3'
miRNA:   3'- -CUGCGGCaGACGGGCC-----GGcAGGC-CCU- -5'
25535 3' -64.7 NC_005337.1 + 64512 0.66 0.47831
Target:  5'- aGCG-CGUacaugGCCaCGGCCGUCCuGGAg -3'
miRNA:   3'- cUGCgGCAga---CGG-GCCGGCAGGcCCU- -5'
25535 3' -64.7 NC_005337.1 + 68492 0.66 0.47831
Target:  5'- gGGCGCCGcgCUGCUggCGGCCGU--GGGu -3'
miRNA:   3'- -CUGCGGCa-GACGG--GCCGGCAggCCCu -5'
25535 3' -64.7 NC_005337.1 + 83354 0.66 0.496338
Target:  5'- gGAgGCCGacuggCUGCggaCCGGCCG-CUGGGc -3'
miRNA:   3'- -CUgCGGCa----GACG---GGCCGGCaGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 57393 0.67 0.425451
Target:  5'- --aGCUG-CUGCCCGagauuuccgccgaGCCGUCCGGa- -3'
miRNA:   3'- cugCGGCaGACGGGC-------------CGGCAGGCCcu -5'
25535 3' -64.7 NC_005337.1 + 29127 0.68 0.409709
Target:  5'- aGCGCCagcagcaccauGUCgGCgaCGGCCGUCCGGa- -3'
miRNA:   3'- cUGCGG-----------CAGaCGg-GCCGGCAGGCCcu -5'
25535 3' -64.7 NC_005337.1 + 37894 0.68 0.377782
Target:  5'- -cCGCCGcCUGCUCGGgCGcgaCCGGGu -3'
miRNA:   3'- cuGCGGCaGACGGGCCgGCa--GGCCCu -5'
25535 3' -64.7 NC_005337.1 + 41124 0.72 0.23891
Target:  5'- cGugGUCGUCUGaguCCaCGGCgagacgcgCGUCCGGGAc -3'
miRNA:   3'- -CugCGGCAGAC---GG-GCCG--------GCAGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 42130 0.7 0.279804
Target:  5'- gGACGgCG-CUgGCCCgcGGCgCGUCCGGGGu -3'
miRNA:   3'- -CUGCgGCaGA-CGGG--CCG-GCAGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 23830 0.7 0.28608
Target:  5'- --aGCCG-CUGUUCaGCCGUCUGGGGa -3'
miRNA:   3'- cugCGGCaGACGGGcCGGCAGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 6668 0.7 0.312296
Target:  5'- aACGCCGUCUGUCCGGCguCGUUuugaCGGu- -3'
miRNA:   3'- cUGCGGCAGACGGGCCG--GCAG----GCCcu -5'
25535 3' -64.7 NC_005337.1 + 76244 0.69 0.326072
Target:  5'- -cCGCCGUCgaagagcgcgGCCUGGCCGagcacgcCCGGGc -3'
miRNA:   3'- cuGCGGCAGa---------CGGGCCGGCa------GGCCCu -5'
25535 3' -64.7 NC_005337.1 + 2517 0.69 0.333127
Target:  5'- -cUGCCGcaccUCggagGCCCGGaCGUCCGGGc -3'
miRNA:   3'- cuGCGGC----AGa---CGGGCCgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 89133 0.69 0.35496
Target:  5'- uGGCGCCGggcgcgacuagCUGCCCGa-CGUCUGGGu -3'
miRNA:   3'- -CUGCGGCa----------GACGGGCcgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 99284 0.68 0.375456
Target:  5'- --gGCCGUCUGCCUGGCgcggcgcggcguucCGcagcgCCGGGu -3'
miRNA:   3'- cugCGGCAGACGGGCCG--------------GCa----GGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.