miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 54879 0.71 0.461963
Target:  5'- -cGCGCCGCC-GCGGGaGCAGCu--- -3'
miRNA:   3'- cuCGUGGCGGuCGCCUaCGUCGuucu -5'
25539 3' -57.7 NC_005337.1 + 23729 0.71 0.461963
Target:  5'- uGAcCGCCGCC-GCGGAgcgGCAGCA-GAa -3'
miRNA:   3'- -CUcGUGGCGGuCGCCUa--CGUCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 35517 0.71 0.461963
Target:  5'- cGGCGCUGCCGGUGacgaGGUGCAGgGAGu -3'
miRNA:   3'- cUCGUGGCGGUCGC----CUACGUCgUUCu -5'
25539 3' -57.7 NC_005337.1 + 24516 0.71 0.471415
Target:  5'- cGAGCccguGCCcaaGCCGGCGGAgaUGC-GCGAGAu -3'
miRNA:   3'- -CUCG----UGG---CGGUCGCCU--ACGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 90445 0.71 0.471415
Target:  5'- -cGCGCCGCCGGCccgcUGCAGCGuGGAg -3'
miRNA:   3'- cuCGUGGCGGUCGccu-ACGUCGU-UCU- -5'
25539 3' -57.7 NC_005337.1 + 132603 0.71 0.471415
Target:  5'- cGGGCACCGCaacgacGCGGcgGCGGcCAAGc -3'
miRNA:   3'- -CUCGUGGCGgu----CGCCuaCGUC-GUUCu -5'
25539 3' -57.7 NC_005337.1 + 31040 0.71 0.480965
Target:  5'- cGGGCGCgCaCCAGCGGcagguUGCAGCGGGc -3'
miRNA:   3'- -CUCGUG-GcGGUCGCCu----ACGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 5881 0.71 0.48964
Target:  5'- aGAGCgGCCGCCAGCauGGAcucgucgUGUcGCGAGAu -3'
miRNA:   3'- -CUCG-UGGCGGUCG--CCU-------ACGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 130786 0.71 0.490608
Target:  5'- uGGGCGCCGCCGguGCGGcUGCuGCGc-- -3'
miRNA:   3'- -CUCGUGGCGGU--CGCCuACGuCGUucu -5'
25539 3' -57.7 NC_005337.1 + 4489 0.71 0.490608
Target:  5'- -uGCAUCGCCAGCacGUGCAGCGGc- -3'
miRNA:   3'- cuCGUGGCGGUCGccUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 97011 0.71 0.510156
Target:  5'- -uGCACCugGCguGCGGGUuCGGCAAGAc -3'
miRNA:   3'- cuCGUGG--CGguCGCCUAcGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 80379 0.71 0.514105
Target:  5'- --cCACCGCCAGCGGGgccgccccgacgcgcUGCuugcagaaccAGCAGGAg -3'
miRNA:   3'- cucGUGGCGGUCGCCU---------------ACG----------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 59192 0.7 0.520051
Target:  5'- gGGGCACCGgcgaCGGCuGGAUGguGCA-GAa -3'
miRNA:   3'- -CUCGUGGCg---GUCG-CCUACguCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 21490 0.7 0.539054
Target:  5'- -uGCGCCGCCAcguggcugagcucGCGGA-GCcGCAGGGc -3'
miRNA:   3'- cuCGUGGCGGU-------------CGCCUaCGuCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 120864 0.7 0.550163
Target:  5'- uGGCGuguCCGCCGGUGuGcuacauuUGCAGCAAGAa -3'
miRNA:   3'- cUCGU---GGCGGUCGC-Cu------ACGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 69065 0.7 0.550163
Target:  5'- cAGCGUgGCCAGCGGcgGguGCAcGAg -3'
miRNA:   3'- cUCGUGgCGGUCGCCuaCguCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 82057 0.7 0.560323
Target:  5'- cGAGCGCgGCCacgucccggGGCGuGAUGUAGCGGa- -3'
miRNA:   3'- -CUCGUGgCGG---------UCGC-CUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 17600 0.7 0.560323
Target:  5'- -cGC-CCGCgGGCGGcUGCAGCAc-- -3'
miRNA:   3'- cuCGuGGCGgUCGCCuACGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 1108 0.7 0.570534
Target:  5'- cAGCGCCGCCGcCGGGaGCAGCc--- -3'
miRNA:   3'- cUCGUGGCGGUcGCCUaCGUCGuucu -5'
25539 3' -57.7 NC_005337.1 + 68245 0.7 0.570534
Target:  5'- gGAGCGCgGCCGGCGcGUG-GGCGAGc -3'
miRNA:   3'- -CUCGUGgCGGUCGCcUACgUCGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.