miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 33578 0.73 0.380688
Target:  5'- gCGCGGCGCCGCgUcGCGuCGGccGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGgA-CGU-GUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 108597 0.73 0.380688
Target:  5'- gCGCGACGCCGCCUucgaGgGCcGcgGCGCc -3'
miRNA:   3'- -GCGUUGCGGCGGA----CgUGuCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 68485 0.73 0.380688
Target:  5'- cCGCAccggGCGCCGCgCUGCugGcggccgugGGUGCGCc -3'
miRNA:   3'- -GCGU----UGCGGCG-GACGugU--------CUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 130777 0.73 0.388193
Target:  5'- gCGCAgaccuggGCGCCGCCgGUGCGGcugcUGCGCUu -3'
miRNA:   3'- -GCGU-------UGCGGCGGaCGUGUCu---ACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 105052 0.73 0.389032
Target:  5'- gGCGACGCCcgGCC-GCGCGGcgcUGCGCa -3'
miRNA:   3'- gCGUUGCGG--CGGaCGUGUCu--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 25088 0.72 0.422695
Target:  5'- gCGCGACGCCgagcuccGCCcGCGCGGcgcgGCGCg -3'
miRNA:   3'- -GCGUUGCGG-------CGGaCGUGUCua--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 110224 0.72 0.423581
Target:  5'- cCGCGgccGCGUCGCCcgaGCACAGcUGCGUg -3'
miRNA:   3'- -GCGU---UGCGGCGGa--CGUGUCuACGCGa -5'
25539 5' -58.2 NC_005337.1 + 1105 0.72 0.432501
Target:  5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 82547 0.72 0.432501
Target:  5'- uGCAGCGCCGCaaguuggUGUGCAGcacgGCGCg -3'
miRNA:   3'- gCGUUGCGGCGg------ACGUGUCua--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 1105 0.72 0.432501
Target:  5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 132739 0.72 0.44153
Target:  5'- aGCGGuCGCCGCCcGCACacgaaguggcGGAcGCGCUg -3'
miRNA:   3'- gCGUU-GCGGCGGaCGUG----------UCUaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 62949 0.72 0.44153
Target:  5'- uGCAcCGCCGCC-GCGCGGGU-CGCc -3'
miRNA:   3'- gCGUuGCGGCGGaCGUGUCUAcGCGa -5'
25539 5' -58.2 NC_005337.1 + 98869 0.71 0.450665
Target:  5'- aGCAguacuaccGCGCCGCgC-GCGCGGAcUGCGCg -3'
miRNA:   3'- gCGU--------UGCGGCG-GaCGUGUCU-ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 21150 0.71 0.459902
Target:  5'- cCGCAGCGCguccugcucgaCGCCguucgucGCGCGGAccUGCGCg -3'
miRNA:   3'- -GCGUUGCG-----------GCGGa------CGUGUCU--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 64879 0.71 0.459902
Target:  5'- cCGCGAucgcgUGCCGCCU-CACAGAggcggaccugGCGCUa -3'
miRNA:   3'- -GCGUU-----GCGGCGGAcGUGUCUa---------CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 128299 0.71 0.459902
Target:  5'- gCGCGccugGCGCCGUCUGCucGCGcGcgGCGCg -3'
miRNA:   3'- -GCGU----UGCGGCGGACG--UGU-CuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 84083 0.71 0.459902
Target:  5'- aCGC-GCGCCGCagaGCGCGGAcacggGCGCg -3'
miRNA:   3'- -GCGuUGCGGCGga-CGUGUCUa----CGCGa -5'
25539 5' -58.2 NC_005337.1 + 70039 0.71 0.478673
Target:  5'- cCGCAGCGCCGCaaagaggcgCUGCccgucGCGGAccgcgaacucgUGCGCg -3'
miRNA:   3'- -GCGUUGCGGCG---------GACG-----UGUCU-----------ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 127956 0.71 0.478673
Target:  5'- uGCGAgGCggagauccgCGCCaUGCGCgAGGUGCGCUg -3'
miRNA:   3'- gCGUUgCG---------GCGG-ACGUG-UCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 66074 0.71 0.497812
Target:  5'- uCGCgGACGCgGCCgcgGCgGCGGAgGCGCUg -3'
miRNA:   3'- -GCG-UUGCGgCGGa--CG-UGUCUaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.