miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 113966 1.07 0.001903
Target:  5'- gCGCAACGCCGCCUGCACAGAUGCGCUc -3'
miRNA:   3'- -GCGUUGCGGCGGACGUGUCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 132086 0.8 0.134334
Target:  5'- cCGCGucCGCCGCCUGCGCc-GUGCGCg -3'
miRNA:   3'- -GCGUu-GCGGCGGACGUGucUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 47605 0.78 0.182628
Target:  5'- gGCGACGCCGCgC-GCGCGGccGCGCUg -3'
miRNA:   3'- gCGUUGCGGCG-GaCGUGUCuaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 124430 0.78 0.196901
Target:  5'- gGCAACGCCGC--GCGCGGGUGCGg- -3'
miRNA:   3'- gCGUUGCGGCGgaCGUGUCUACGCga -5'
25539 5' -58.2 NC_005337.1 + 8149 0.76 0.234022
Target:  5'- gGCAugGCCGCgC-GCACGGcGUGCGCg -3'
miRNA:   3'- gCGUugCGGCG-GaCGUGUC-UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 71273 0.76 0.239782
Target:  5'- gCGCucauGCGCCGCgUgGCGCuGGUGCGCUu -3'
miRNA:   3'- -GCGu---UGCGGCGgA-CGUGuCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 68390 0.76 0.245659
Target:  5'- uGCGACGuCCGcCCUGCGCGcGUGCGUg -3'
miRNA:   3'- gCGUUGC-GGC-GGACGUGUcUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 63674 0.76 0.251655
Target:  5'- gGCAACGgCGCCUcgGCAUGGggGCGCg -3'
miRNA:   3'- gCGUUGCgGCGGA--CGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 37946 0.76 0.257772
Target:  5'- aGCAGCGCCGCCaGCgggagGCAGGUcaccuucccgGCGCUg -3'
miRNA:   3'- gCGUUGCGGCGGaCG-----UGUCUA----------CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 10419 0.76 0.264009
Target:  5'- gGCuGCGCCcaggaggacGCCUGCGCGGcgGUGCGCg -3'
miRNA:   3'- gCGuUGCGG---------CGGACGUGUC--UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 122391 0.76 0.264009
Target:  5'- gCGCGAgGUCGUgCUGCGCGGcgGCGCg -3'
miRNA:   3'- -GCGUUgCGGCG-GACGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 36273 0.76 0.264009
Target:  5'- aCGCGAUGCCGCaCUGCGCGuccUGCGUUc -3'
miRNA:   3'- -GCGUUGCGGCG-GACGUGUcu-ACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 25718 0.75 0.290186
Target:  5'- gGCcGCGCCGCCaGCGuCAGgcGCGCg -3'
miRNA:   3'- gCGuUGCGGCGGaCGU-GUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 23314 0.75 0.29704
Target:  5'- aCGuCGACGCgGCC-GCGCAGcUGCGCa -3'
miRNA:   3'- -GC-GUUGCGgCGGaCGUGUCuACGCGa -5'
25539 5' -58.2 NC_005337.1 + 17041 0.75 0.304019
Target:  5'- uCGCGuuccGCGCgGUCUGCACguuccgcuGGAUGCGCa -3'
miRNA:   3'- -GCGU----UGCGgCGGACGUG--------UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 110345 0.75 0.304019
Target:  5'- gGCGucGCGCgCGCCUGcCGCGGgcGCGCg -3'
miRNA:   3'- gCGU--UGCG-GCGGAC-GUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 87946 0.74 0.311124
Target:  5'- gGCGGCaGCCcggaccuccugcGCCUGCACGGG-GCGCUg -3'
miRNA:   3'- gCGUUG-CGG------------CGGACGUGUCUaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 94796 0.74 0.318354
Target:  5'- gCGCGcgcGCGUCGCCgGCACGGAgGCGUc -3'
miRNA:   3'- -GCGU---UGCGGCGGaCGUGUCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 109207 0.74 0.340797
Target:  5'- gCGCAgcuugacgaACGCCGCCcGCACGGc-GCGCa -3'
miRNA:   3'- -GCGU---------UGCGGCGGaCGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 74933 0.74 0.340797
Target:  5'- uCGCGcGCGCgGCC-GCGCGGAUGCGgUg -3'
miRNA:   3'- -GCGU-UGCGgCGGaCGUGUCUACGCgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.