miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 76959 0.65 0.794564
Target:  5'- aCGCGGCGCUugGCC-GCGCGGuuccgagagcgGCGCc -3'
miRNA:   3'- -GCGUUGCGG--CGGaCGUGUCua---------CGCGa -5'
25539 5' -58.2 NC_005337.1 + 51692 0.66 0.75909
Target:  5'- gGCGAgGCCagucugGCCUGCgACGGcgacGCGCUg -3'
miRNA:   3'- gCGUUgCGG------CGGACG-UGUCua--CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 115053 0.66 0.749463
Target:  5'- gGCAugGCCGUCgUGCuCAGccccuucUGCGCc -3'
miRNA:   3'- gCGUugCGGCGG-ACGuGUCu------ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 35559 0.66 0.749463
Target:  5'- gCGCAggGCGCCGCgCga-GCGGAUGC-CUa -3'
miRNA:   3'- -GCGU--UGCGGCG-GacgUGUCUACGcGA- -5'
25539 5' -58.2 NC_005337.1 + 49086 0.66 0.787257
Target:  5'- -cCAACGCCuCCaucGCGCAGcucGUGCGCg -3'
miRNA:   3'- gcGUUGCGGcGGa--CGUGUC---UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 104488 0.66 0.75909
Target:  5'- gCGCGGCGCUGCUacGCGCuc--GCGCa -3'
miRNA:   3'- -GCGUUGCGGCGGa-CGUGucuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 74708 0.66 0.75909
Target:  5'- gGCAu--CCGCC-GCGacCAGAUGCGCa -3'
miRNA:   3'- gCGUugcGGCGGaCGU--GUCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 128036 0.66 0.75909
Target:  5'- aGCGACGCUGaCUcGCGCGGGgacaCGCUg -3'
miRNA:   3'- gCGUUGCGGC-GGaCGUGUCUac--GCGA- -5'
25539 5' -58.2 NC_005337.1 + 126062 0.66 0.75909
Target:  5'- aCGCGACccuuGCCGaCCUGgACgAGGUGaCGCc -3'
miRNA:   3'- -GCGUUG----CGGC-GGACgUG-UCUAC-GCGa -5'
25539 5' -58.2 NC_005337.1 + 3434 0.66 0.768604
Target:  5'- uCGCAGCcgagcucuaugaGCCGCCUGauCACGGcgGCaCUg -3'
miRNA:   3'- -GCGUUG------------CGGCGGAC--GUGUCuaCGcGA- -5'
25539 5' -58.2 NC_005337.1 + 80675 0.66 0.75909
Target:  5'- gCGCGGCG-CGCUUccgcgcGCGCAuGUGCGCg -3'
miRNA:   3'- -GCGUUGCgGCGGA------CGUGUcUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 17257 0.66 0.775192
Target:  5'- gGCAGCGCCcggagcgugGCCUggcGCACguugaagcugucgaGGAUGUGCc -3'
miRNA:   3'- gCGUUGCGG---------CGGA---CGUG--------------UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 63928 0.66 0.749463
Target:  5'- gGCGGCGCacCGCC-GUGCGGAacgccgucuucgUGCGCg -3'
miRNA:   3'- gCGUUGCG--GCGGaCGUGUCU------------ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 77387 0.66 0.749463
Target:  5'- cCGCAACaCCaGCCgGCGCcgcgggagguGGAUGUGCg -3'
miRNA:   3'- -GCGUUGcGG-CGGaCGUG----------UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 124011 0.66 0.768604
Target:  5'- aCGCGcCGCCGCCgauggagGCGCcccgcgaaGGccGCGCg -3'
miRNA:   3'- -GCGUuGCGGCGGa------CGUG--------UCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 99653 0.66 0.749463
Target:  5'- gCGCGGCaUCGCC-GCGCGGcuggGCGCg -3'
miRNA:   3'- -GCGUUGcGGCGGaCGUGUCua--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 40530 0.66 0.75909
Target:  5'- gGCAugcaGCCGCCgcgGCGCGcgguGGUGCGg- -3'
miRNA:   3'- gCGUug--CGGCGGa--CGUGU----CUACGCga -5'
25539 5' -58.2 NC_005337.1 + 74152 0.66 0.749463
Target:  5'- gGCAGCGaggucaCCGCCgUGCuGCGGGagGCGCg -3'
miRNA:   3'- gCGUUGC------GGCGG-ACG-UGUCUa-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 37887 0.66 0.749463
Target:  5'- uCGUccucCGCCGCCUGCuCGG--GCGCg -3'
miRNA:   3'- -GCGuu--GCGGCGGACGuGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 39266 0.66 0.768604
Target:  5'- gCGCAGCaGCCGCCgcugucGCGCAaGUaCGCg -3'
miRNA:   3'- -GCGUUG-CGGCGGa-----CGUGUcUAcGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.