Results 1 - 20 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25539 | 5' | -58.2 | NC_005337.1 | + | 98869 | 0.71 | 0.450665 |
Target: 5'- aGCAguacuaccGCGCCGCgC-GCGCGGAcUGCGCg -3' miRNA: 3'- gCGU--------UGCGGCG-GaCGUGUCU-ACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 94796 | 0.74 | 0.318354 |
Target: 5'- gCGCGcgcGCGUCGCCgGCACGGAgGCGUc -3' miRNA: 3'- -GCGU---UGCGGCGGaCGUGUCUaCGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 109207 | 0.74 | 0.340797 |
Target: 5'- gCGCAgcuugacgaACGCCGCCcGCACGGc-GCGCa -3' miRNA: 3'- -GCGU---------UGCGGCGGaCGUGUCuaCGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 74933 | 0.74 | 0.340797 |
Target: 5'- uCGCGcGCGCgGCC-GCGCGGAUGCGgUg -3' miRNA: 3'- -GCGU-UGCGgCGGaCGUGUCUACGCgA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 68485 | 0.73 | 0.380688 |
Target: 5'- cCGCAccggGCGCCGCgCUGCugGcggccgugGGUGCGCc -3' miRNA: 3'- -GCGU----UGCGGCG-GACGugU--------CUACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 130777 | 0.73 | 0.388193 |
Target: 5'- gCGCAgaccuggGCGCCGCCgGUGCGGcugcUGCGCUu -3' miRNA: 3'- -GCGU-------UGCGGCGGaCGUGUCu---ACGCGA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 110224 | 0.72 | 0.423581 |
Target: 5'- cCGCGgccGCGUCGCCcgaGCACAGcUGCGUg -3' miRNA: 3'- -GCGU---UGCGGCGGa--CGUGUCuACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 82547 | 0.72 | 0.432501 |
Target: 5'- uGCAGCGCCGCaaguuggUGUGCAGcacgGCGCg -3' miRNA: 3'- gCGUUGCGGCGg------ACGUGUCua--CGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 1105 | 0.72 | 0.432501 |
Target: 5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3' miRNA: 3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 110345 | 0.75 | 0.304019 |
Target: 5'- gGCGucGCGCgCGCCUGcCGCGGgcGCGCg -3' miRNA: 3'- gCGU--UGCG-GCGGAC-GUGUCuaCGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 23314 | 0.75 | 0.29704 |
Target: 5'- aCGuCGACGCgGCC-GCGCAGcUGCGCa -3' miRNA: 3'- -GC-GUUGCGgCGGaCGUGUCuACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 25718 | 0.75 | 0.290186 |
Target: 5'- gGCcGCGCCGCCaGCGuCAGgcGCGCg -3' miRNA: 3'- gCGuUGCGGCGGaCGU-GUCuaCGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 47605 | 0.78 | 0.182628 |
Target: 5'- gGCGACGCCGCgC-GCGCGGccGCGCUg -3' miRNA: 3'- gCGUUGCGGCG-GaCGUGUCuaCGCGA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 71273 | 0.76 | 0.239782 |
Target: 5'- gCGCucauGCGCCGCgUgGCGCuGGUGCGCUu -3' miRNA: 3'- -GCGu---UGCGGCGgA-CGUGuCUACGCGA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 68390 | 0.76 | 0.245659 |
Target: 5'- uGCGACGuCCGcCCUGCGCGcGUGCGUg -3' miRNA: 3'- gCGUUGC-GGC-GGACGUGUcUACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 63674 | 0.76 | 0.251655 |
Target: 5'- gGCAACGgCGCCUcgGCAUGGggGCGCg -3' miRNA: 3'- gCGUUGCgGCGGA--CGUGUCuaCGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 37946 | 0.76 | 0.257772 |
Target: 5'- aGCAGCGCCGCCaGCgggagGCAGGUcaccuucccgGCGCUg -3' miRNA: 3'- gCGUUGCGGCGGaCG-----UGUCUA----------CGCGA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 10419 | 0.76 | 0.264009 |
Target: 5'- gGCuGCGCCcaggaggacGCCUGCGCGGcgGUGCGCg -3' miRNA: 3'- gCGuUGCGG---------CGGACGUGUC--UACGCGa -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 36273 | 0.76 | 0.264009 |
Target: 5'- aCGCGAUGCCGCaCUGCGCGuccUGCGUUc -3' miRNA: 3'- -GCGUUGCGGCG-GACGUGUcu-ACGCGA- -5' |
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25539 | 5' | -58.2 | NC_005337.1 | + | 122391 | 0.76 | 0.264009 |
Target: 5'- gCGCGAgGUCGUgCUGCGCGGcgGCGCg -3' miRNA: 3'- -GCGUUgCGGCG-GACGUGUCuaCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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