miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 1105 0.72 0.432501
Target:  5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 1105 0.72 0.432501
Target:  5'- gCGCAGCGCCGCC-GCcgggagcagccGCAGcacGCGCg -3'
miRNA:   3'- -GCGUUGCGGCGGaCG-----------UGUCua-CGCGa -5'
25539 5' -58.2 NC_005337.1 + 1435 0.67 0.710008
Target:  5'- uGCgAGCGCgGCg-GCGCcgAGGUGCGCg -3'
miRNA:   3'- gCG-UUGCGgCGgaCGUG--UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 2656 0.66 0.787257
Target:  5'- gGCGcCgGCCGCCUccacGCugAG-UGCGCg -3'
miRNA:   3'- gCGUuG-CGGCGGA----CGugUCuACGCGa -5'
25539 5' -58.2 NC_005337.1 + 2922 0.69 0.57732
Target:  5'- aGCGGCGUCGCCggaGUGCcGAcGCGCa -3'
miRNA:   3'- gCGUUGCGGCGGa--CGUGuCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 2984 0.66 0.787257
Target:  5'- gGCGACGaacgCGCCUGCgacugGCGGAcGgGCUc -3'
miRNA:   3'- gCGUUGCg---GCGGACG-----UGUCUaCgCGA- -5'
25539 5' -58.2 NC_005337.1 + 3357 0.68 0.638742
Target:  5'- -uCAGCGaCCGCUUGCAgGaGGUGUGCg -3'
miRNA:   3'- gcGUUGC-GGCGGACGUgU-CUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 3434 0.66 0.768604
Target:  5'- uCGCAGCcgagcucuaugaGCCGCCUGauCACGGcgGCaCUg -3'
miRNA:   3'- -GCGUUG------------CGGCGGAC--GUGUCuaCGcGA- -5'
25539 5' -58.2 NC_005337.1 + 3486 0.67 0.729905
Target:  5'- gCGCAGCaGCCGCaccggcgGCGCccAGGucUGCGCg -3'
miRNA:   3'- -GCGUUG-CGGCGga-----CGUG--UCU--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 4215 0.67 0.739731
Target:  5'- aGCGGCGUCGg-UGCAaaAGGUGCGCUa -3'
miRNA:   3'- gCGUUGCGGCggACGUg-UCUACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 4566 0.67 0.699954
Target:  5'- cCGCAugaucUGCUGCCgcggGCGCGGcgacUGCGCg -3'
miRNA:   3'- -GCGUu----GCGGCGGa---CGUGUCu---ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 5569 0.68 0.659258
Target:  5'- aCGCAGCG-CGCUcGCAgauCAGcUGCGCUa -3'
miRNA:   3'- -GCGUUGCgGCGGaCGU---GUCuACGCGA- -5'
25539 5' -58.2 NC_005337.1 + 5789 0.66 0.749463
Target:  5'- aCGCGACGCaCGCCcgcgaGCACGcGGUcucccGCGCc -3'
miRNA:   3'- -GCGUUGCG-GCGGa----CGUGU-CUA-----CGCGa -5'
25539 5' -58.2 NC_005337.1 + 8149 0.76 0.234022
Target:  5'- gGCAugGCCGCgC-GCACGGcGUGCGCg -3'
miRNA:   3'- gCGUugCGGCG-GaCGUGUC-UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 10241 0.67 0.729905
Target:  5'- gGCAggcGCGCgGCCUuCGCGGG-GCGCc -3'
miRNA:   3'- gCGU---UGCGgCGGAcGUGUCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 10419 0.76 0.264009
Target:  5'- gGCuGCGCCcaggaggacGCCUGCGCGGcgGUGCGCg -3'
miRNA:   3'- gCGuUGCGG---------CGGACGUGUC--UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 10554 0.68 0.679685
Target:  5'- aGCAGCGuCUGCUUccGCACGGgcGUGCc -3'
miRNA:   3'- gCGUUGC-GGCGGA--CGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 11161 0.66 0.768604
Target:  5'- cCGCAcgACGUgcuCGCCgUGC-CAGAacUGCGCg -3'
miRNA:   3'- -GCGU--UGCG---GCGG-ACGuGUCU--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 11878 0.7 0.547042
Target:  5'- cCGC-GCGCCGCC-GCGCAGcacgaccucGCGCa -3'
miRNA:   3'- -GCGuUGCGGCGGaCGUGUCua-------CGCGa -5'
25539 5' -58.2 NC_005337.1 + 12346 0.7 0.537058
Target:  5'- uGCAGCGCCGUCcGUccGCGGAcgucgcgGCGCg -3'
miRNA:   3'- gCGUUGCGGCGGaCG--UGUCUa------CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.