miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 132389 0.65 0.967405
Target:  5'- gAGGCCGcCGAGugcgcauagcgcugGuGAAcagcGGACacGCGGCCa -3'
miRNA:   3'- -UCCGGCuGCUU--------------UuCUU----CCUG--UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 42806 0.66 0.958056
Target:  5'- uGG-CGGCGcacGAGAGccGGAUaACGGCCa -3'
miRNA:   3'- uCCgGCUGC---UUUUCuuCCUG-UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 47870 0.66 0.966447
Target:  5'- cGGGCgCGGCGGAcgcAGAcuucugcgcgcaguGGuaaACGCGGCCg -3'
miRNA:   3'- -UCCG-GCUGCUUu--UCUu-------------CC---UGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 6489 0.66 0.950048
Target:  5'- -cGCgGACGAGGAGGucGAUcgGCGGCUu -3'
miRNA:   3'- ucCGgCUGCUUUUCUucCUG--UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 83970 0.66 0.961711
Target:  5'- aGGGCagCGGCGGcgcGGgcGGGCACgucugGGCCu -3'
miRNA:   3'- -UCCG--GCUGCUuu-UCuuCCUGUG-----CCGG- -5'
25540 5' -53.5 NC_005337.1 + 101262 0.66 0.958056
Target:  5'- cGGcGCgGACGcGAAGAu---CGCGGCCa -3'
miRNA:   3'- -UC-CGgCUGCuUUUCUuccuGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 128432 0.66 0.950048
Target:  5'- cAGGCCaGCGA------GGuCGCGGCCg -3'
miRNA:   3'- -UCCGGcUGCUuuucuuCCuGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 29183 0.66 0.948765
Target:  5'- cGGagacgCGGCGGcgcccgugccGAAGGAGGcgcugcgcagcgccGCGCGGCCg -3'
miRNA:   3'- uCCg----GCUGCU----------UUUCUUCC--------------UGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 49982 0.66 0.958056
Target:  5'- uGGCUcACGG--AGAAGGugAUGGUg -3'
miRNA:   3'- uCCGGcUGCUuuUCUUCCugUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 1348 0.66 0.949623
Target:  5'- cGGGUCGcCGAAGGuGAcgguccugAGGACGgcgguguCGGCCa -3'
miRNA:   3'- -UCCGGCuGCUUUU-CU--------UCCUGU-------GCCGG- -5'
25540 5' -53.5 NC_005337.1 + 108571 0.66 0.965138
Target:  5'- aAGGCUGACGAGucgcuccuccAcacuuucgcuGGAGGGAgCAcCGGCg -3'
miRNA:   3'- -UCCGGCUGCUU----------U----------UCUUCCU-GU-GCCGg -5'
25540 5' -53.5 NC_005337.1 + 71843 0.66 0.965138
Target:  5'- cGGCC-ACGAuGAGAGGuGCcCGGCa -3'
miRNA:   3'- uCCGGcUGCUuUUCUUCcUGuGCCGg -5'
25540 5' -53.5 NC_005337.1 + 64161 0.66 0.95255
Target:  5'- gAGGgCGGCGAGGAGAugcgcguuaaguucGugggcaaGGACAgGGUCg -3'
miRNA:   3'- -UCCgGCUGCUUUUCU--------------U-------CCUGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 122451 0.66 0.966447
Target:  5'- -cGCCGacuucaucgcgcaguGCGAGGcaGAGGugGCGGUCa -3'
miRNA:   3'- ucCGGC---------------UGCUUUucUUCCugUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 45190 0.66 0.960638
Target:  5'- uGGCCGugccCGGGgcgcugucgcucauGAGucucgcggcGGACGCGGCCu -3'
miRNA:   3'- uCCGGCu---GCUU--------------UUCuu-------CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 119814 0.66 0.965138
Target:  5'- aGGGUgGugGAGAu---GGACAUugagGGCCu -3'
miRNA:   3'- -UCCGgCugCUUUucuuCCUGUG----CCGG- -5'
25540 5' -53.5 NC_005337.1 + 123568 0.66 0.948765
Target:  5'- uGGCCGugGAcgcGGAGuGCcgcugcugcgagcuGCGGCCg -3'
miRNA:   3'- uCCGGCugCUuuuCUUCcUG--------------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 84892 0.66 0.961711
Target:  5'- cGGCCG-CGggGGGcGGuGCGgCGGUCg -3'
miRNA:   3'- uCCGGCuGCuuUUCuUCcUGU-GCCGG- -5'
25540 5' -53.5 NC_005337.1 + 121838 0.66 0.95417
Target:  5'- cGGCCGACGugcucguGAAGucGGugGgcGCCa -3'
miRNA:   3'- uCCGGCUGCu------UUUCuuCCugUgcCGG- -5'
25540 5' -53.5 NC_005337.1 + 56925 0.66 0.965138
Target:  5'- -aGCCGGCuccGAGcgcGGAgGCGGCCa -3'
miRNA:   3'- ucCGGCUGcuuUUCuu-CCUgUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.