miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 74228 0.73 0.691592
Target:  5'- cGGCgGAUGAucGGGAGGGCG-GGUCg -3'
miRNA:   3'- uCCGgCUGCUuuUCUUCCUGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 16664 0.75 0.560945
Target:  5'- cGGCCGGuCGAGAcGAGGGucgacagcaucucgcGCACGGCg -3'
miRNA:   3'- uCCGGCU-GCUUUuCUUCC---------------UGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 5720 0.75 0.567098
Target:  5'- cAGGCCGgaGCGggGAGcc--ACGCGGCCg -3'
miRNA:   3'- -UCCGGC--UGCuuUUCuuccUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 98991 0.74 0.608485
Target:  5'- gGGGCCGAgGugGAGccgccccccGAGGugcGCGCGGCCu -3'
miRNA:   3'- -UCCGGCUgCuuUUC---------UUCC---UGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 92486 0.74 0.629317
Target:  5'- gAGGCCGACcugguGAugccGAAGAAGGcCgACGGCUa -3'
miRNA:   3'- -UCCGGCUG-----CU----UUUCUUCCuG-UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 10403 0.74 0.638699
Target:  5'- cGGGCUGugGAGGugcggcugcgcccAGGAGGACgccugcGCGGCg -3'
miRNA:   3'- -UCCGGCugCUUU-------------UCUUCCUG------UGCCGg -5'
25540 5' -53.5 NC_005337.1 + 68251 0.73 0.691592
Target:  5'- cGGCCGGCGcguGGGcgagcgucGAGGACuucgacgucuGCGGCCg -3'
miRNA:   3'- uCCGGCUGCuu-UUC--------UUCCUG----------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 47063 0.73 0.691592
Target:  5'- cGGCgCuACGAGGAGAAGuGCuGCGGCCg -3'
miRNA:   3'- uCCG-GcUGCUUUUCUUCcUG-UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 50361 0.73 0.691592
Target:  5'- -cGCCGGCGGAGAcGGGcccGGGCACGGgCg -3'
miRNA:   3'- ucCGGCUGCUUUU-CUU---CCUGUGCCgG- -5'
25540 5' -53.5 NC_005337.1 + 1061 0.75 0.556852
Target:  5'- gAGGCCGGCGggGgcGGAcugcGGGACggaGCGGgCu -3'
miRNA:   3'- -UCCGGCUGCuuU--UCU----UCCUG---UGCCgG- -5'
25540 5' -53.5 NC_005337.1 + 36102 0.76 0.506553
Target:  5'- -cGCCGACGAu--GGAGGucACGCGGUCg -3'
miRNA:   3'- ucCGGCUGCUuuuCUUCC--UGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 63224 0.77 0.477315
Target:  5'- aAGGCCGcCGAGAAGAAGccCAaGGCCg -3'
miRNA:   3'- -UCCGGCuGCUUUUCUUCcuGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 84077 0.82 0.242149
Target:  5'- cAGGgCGGCGGAGccAGAGGGuuGCGGCCg -3'
miRNA:   3'- -UCCgGCUGCUUU--UCUUCCugUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 77668 0.79 0.361644
Target:  5'- cGGCCGGCGAAGGccAGGAaGCGGUCg -3'
miRNA:   3'- uCCGGCUGCUUUUcuUCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 842 0.79 0.369827
Target:  5'- cGGGCuCGACGAAGgcggcGGGcagcgcGGGCGCGGCCg -3'
miRNA:   3'- -UCCG-GCUGCUUU-----UCUu-----CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 90066 0.79 0.378135
Target:  5'- cGGUCGAUGAGGuuGuuGGGCAUGGCCa -3'
miRNA:   3'- uCCGGCUGCUUUu-CuuCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 12246 0.78 0.395124
Target:  5'- cGGCacCGACGggGAuGGAGGAgaACGGCCa -3'
miRNA:   3'- uCCG--GCUGCuuUU-CUUCCUg-UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 132478 0.78 0.420616
Target:  5'- aGGGUucccgugCGGCGgcAGGAGGGACugGCGGCCg -3'
miRNA:   3'- -UCCG-------GCUGCuuUUCUUCCUG--UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 59072 0.77 0.439683
Target:  5'- uGGGCCGGC-AGAAGAccguGGACA-GGCCg -3'
miRNA:   3'- -UCCGGCUGcUUUUCUu---CCUGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 88950 0.77 0.448935
Target:  5'- cGGaCCGcGCGGAGGcGGAGGGCGCGGUCc -3'
miRNA:   3'- uCC-GGC-UGCUUUU-CUUCCUGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.