miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 49 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 49 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 102 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 102 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 163 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 163 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 224 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 224 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 285 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 285 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 346 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 346 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 407 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 407 0.72 0.7322
Target:  5'- cGGGCUGACuc-GAGAacucGGGAgGCGGUCg -3'
miRNA:   3'- -UCCGGCUGcuuUUCU----UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 842 0.79 0.369827
Target:  5'- cGGGCuCGACGAAGgcggcGGGcagcgcGGGCGCGGCCg -3'
miRNA:   3'- -UCCG-GCUGCUUU-----UCUu-----CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 842 0.79 0.369827
Target:  5'- cGGGCuCGACGAAGgcggcGGGcagcgcGGGCGCGGCCg -3'
miRNA:   3'- -UCCG-GCUGCUUU-----UCUu-----CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 969 0.68 0.895361
Target:  5'- gGGGCUGgaGCGGcgGGGcuGGCGCGGCg -3'
miRNA:   3'- -UCCGGC--UGCUuuUCUucCUGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 969 0.68 0.895361
Target:  5'- gGGGCUGgaGCGGcgGGGcuGGCGCGGCg -3'
miRNA:   3'- -UCCGGC--UGCUuuUCUucCUGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 1020 0.67 0.93917
Target:  5'- gAGGCCGuCGAAuuucacuuugcgcGGGAGGcGgGCGGCg -3'
miRNA:   3'- -UCCGGCuGCUUu------------UCUUCC-UgUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 1020 0.67 0.93917
Target:  5'- gAGGCCGuCGAAuuucacuuugcgcGGGAGGcGgGCGGCg -3'
miRNA:   3'- -UCCGGCuGCUUu------------UCUUCC-UgUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.