miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25541 5' -58.7 NC_005337.1 + 124032 0.68 0.634984
Target:  5'- --cGCCCCgcgaaggccgcgcgCCUGCCGcGGCuGGAGCu -3'
miRNA:   3'- ggaCGGGGa-------------GGACGGCcUCGuUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 123990 0.67 0.711712
Target:  5'- uCCgagGCCCCUCC-GCCaGGAugguggucCGGGAGCu -3'
miRNA:   3'- -GGa--CGGGGAGGaCGG-CCUc-------GUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 120322 0.69 0.600398
Target:  5'- uCCUGUCCCcgcCCUcGCCcauGGAGCAcgacGGGGCu -3'
miRNA:   3'- -GGACGGGGa--GGA-CGG---CCUCGU----UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 118372 0.77 0.205325
Target:  5'- cUCUGCCuCCggcgcCCUGCUGGGGCAgcGGAACc -3'
miRNA:   3'- -GGACGG-GGa----GGACGGCCUCGU--UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 113263 1.11 0.000881
Target:  5'- cCCUGCCCCUCCUGCCGGAGCAAGAACa -3'
miRNA:   3'- -GGACGGGGAGGACGGCCUCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 112099 0.67 0.701754
Target:  5'- gCCgcacggGCCcggCCUUCUGCaGGAGCGuGAACa -3'
miRNA:   3'- -GGa-----CGG---GGAGGACGgCCUCGUuCUUG- -5'
25541 5' -58.7 NC_005337.1 + 103672 0.69 0.570092
Target:  5'- --gGCCaUCUCCUGCCuGAGCGcGGACc -3'
miRNA:   3'- ggaCGG-GGAGGACGGcCUCGUuCUUG- -5'
25541 5' -58.7 NC_005337.1 + 102989 0.68 0.651269
Target:  5'- uUCUGCCCCUCggacgUGCCcGAGCGcggcccgcagguGGGGCu -3'
miRNA:   3'- -GGACGGGGAGg----ACGGcCUCGU------------UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 101729 0.68 0.620728
Target:  5'- aCUGCCCUgaCgUGCCGgGAGCu-GAGCc -3'
miRNA:   3'- gGACGGGGa-GgACGGC-CUCGuuCUUG- -5'
25541 5' -58.7 NC_005337.1 + 97400 0.72 0.401247
Target:  5'- ----aCCCUCCUgccGCCGGAGCcAGAACc -3'
miRNA:   3'- ggacgGGGAGGA---CGGCCUCGuUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 96691 0.67 0.701754
Target:  5'- --cGCCCUUCgCguuCCGGAGCGAGGu- -3'
miRNA:   3'- ggaCGGGGAG-Gac-GGCCUCGUUCUug -5'
25541 5' -58.7 NC_005337.1 + 96327 0.66 0.750783
Target:  5'- aCCUGCCUC-CCgcuggcggcgcUGCUGGAcuucgcgaaGCGGGGGCu -3'
miRNA:   3'- -GGACGGGGaGG-----------ACGGCCU---------CGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 95985 0.72 0.427258
Target:  5'- --cGCCCCUCCaccggUGCUugacGAGCGGGAACg -3'
miRNA:   3'- ggaCGGGGAGG-----ACGGc---CUCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 90755 0.66 0.760316
Target:  5'- --cGCUCCUCCa--CGGAGCugcGGAACu -3'
miRNA:   3'- ggaCGGGGAGGacgGCCUCGu--UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 86345 0.68 0.66143
Target:  5'- gCCgGCCuCCUCCgcaacgacCCGGGGCAcggucuugugcgGGAACa -3'
miRNA:   3'- -GGaCGG-GGAGGac------GGCCUCGU------------UCUUG- -5'
25541 5' -58.7 NC_005337.1 + 75537 0.8 0.144428
Target:  5'- --aGCCCCUCCgUGCCGcuuAGCGAGAACa -3'
miRNA:   3'- ggaCGGGGAGG-ACGGCc--UCGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 75100 0.66 0.750783
Target:  5'- -gUGCCCCgacgCacgGCCuGGGGgAGGAACg -3'
miRNA:   3'- ggACGGGGa---Gga-CGG-CCUCgUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 74873 0.7 0.520526
Target:  5'- gCCUGCUCUUCCUgcGCCcGAcCGAGGACg -3'
miRNA:   3'- -GGACGGGGAGGA--CGGcCUcGUUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 74814 0.77 0.205325
Target:  5'- aCCUGCgCCuCUCCaGCgCGGAGguGGAGCg -3'
miRNA:   3'- -GGACG-GG-GAGGaCG-GCCUCguUCUUG- -5'
25541 5' -58.7 NC_005337.1 + 71789 0.66 0.750783
Target:  5'- gCC-GCCCCgcCCgagGUCGGAGCGcauGAAUa -3'
miRNA:   3'- -GGaCGGGGa-GGa--CGGCCUCGUu--CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.