miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 3' -60.5 NC_005337.1 + 107692 1.09 0.001011
Target:  5'- gUGUCGCUCCCCCGGCGACGUCGUCACg -3'
miRNA:   3'- -ACAGCGAGGGGGCCGCUGCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 89992 0.8 0.125493
Target:  5'- cGUCGgUgCUCCCGGUGACGUCGUCcaGCa -3'
miRNA:   3'- aCAGCgA-GGGGGCCGCUGCAGCAG--UG- -5'
25552 3' -60.5 NC_005337.1 + 123676 0.77 0.182132
Target:  5'- cGcCGCUCCCCC-GCGGCGggaccgggcUCGUCGCg -3'
miRNA:   3'- aCaGCGAGGGGGcCGCUGC---------AGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 72386 0.76 0.205066
Target:  5'- cGUCGCggucagcgagCCCCCGggguggcGCGACGUCGUgCACu -3'
miRNA:   3'- aCAGCGa---------GGGGGC-------CGCUGCAGCA-GUG- -5'
25552 3' -60.5 NC_005337.1 + 41582 0.72 0.363633
Target:  5'- cGUCGaagacggCCCCCagcgagGGCGugGUCGUgGCg -3'
miRNA:   3'- aCAGCga-----GGGGG------CCGCugCAGCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 131547 0.72 0.379394
Target:  5'- --cCGCUa--CCGGCgGACGUCGUCGCg -3'
miRNA:   3'- acaGCGAgggGGCCG-CUGCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 130035 0.71 0.41226
Target:  5'- gGUCGCcgcgcugaacacUCaCCCGGCGACGUccguuguggccgCGUCGCu -3'
miRNA:   3'- aCAGCG------------AGgGGGCCGCUGCA------------GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 95752 0.71 0.428476
Target:  5'- cGcCGUgcacgaUCCCCgcgaucgCGGCGACGUCGUCGg -3'
miRNA:   3'- aCaGCG------AGGGG-------GCCGCUGCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 59510 0.7 0.464708
Target:  5'- aGUCGCg--CCCGGUGACcagGUCGUCGa -3'
miRNA:   3'- aCAGCGaggGGGCCGCUG---CAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 45408 0.7 0.464708
Target:  5'- cUGaCGCUCCaCUGcGCGGCGUCGgagCGCa -3'
miRNA:   3'- -ACaGCGAGGgGGC-CGCUGCAGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 25674 0.7 0.482952
Target:  5'- cGcCGCggCCCUCgaaGGCGGCGUCG-CGCa -3'
miRNA:   3'- aCaGCGa-GGGGG---CCGCUGCAGCaGUG- -5'
25552 3' -60.5 NC_005337.1 + 38913 0.69 0.510943
Target:  5'- cGUCGCUguugCCUUCGGCGAC-UCGgCGCu -3'
miRNA:   3'- aCAGCGA----GGGGGCCGCUGcAGCaGUG- -5'
25552 3' -60.5 NC_005337.1 + 4181 0.69 0.510943
Target:  5'- cGUCGCUgaCCCCGGCcucaACGgccugCGUCAg -3'
miRNA:   3'- aCAGCGAg-GGGGCCGc---UGCa----GCAGUg -5'
25552 3' -60.5 NC_005337.1 + 10081 0.69 0.510943
Target:  5'- aGUC-CUCCUCCGaCGACGUgGUgGCg -3'
miRNA:   3'- aCAGcGAGGGGGCcGCUGCAgCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 65783 0.69 0.520424
Target:  5'- cUGUcCGCgCCCCCGGUG-CGcacCGUCAUg -3'
miRNA:   3'- -ACA-GCGaGGGGGCCGCuGCa--GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 110625 0.69 0.539586
Target:  5'- gGUCGaggUCCCuCCGGaCGACGcucUCGUCGg -3'
miRNA:   3'- aCAGCg--AGGG-GGCC-GCUGC---AGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 79093 0.69 0.549257
Target:  5'- --aCGCgcaugCCCaCCGGC-ACGUCGUCGa -3'
miRNA:   3'- acaGCGa----GGG-GGCCGcUGCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 38852 0.69 0.549257
Target:  5'- -aUCGCUgCCCCGcGUGACGcUCGUgcgggCGCa -3'
miRNA:   3'- acAGCGAgGGGGC-CGCUGC-AGCA-----GUG- -5'
25552 3' -60.5 NC_005337.1 + 130568 0.69 0.553141
Target:  5'- aUGUCGC-CCCCUGGCGcCGaggacaagaagccgCGUCGg -3'
miRNA:   3'- -ACAGCGaGGGGGCCGCuGCa-------------GCAGUg -5'
25552 3' -60.5 NC_005337.1 + 59646 0.68 0.558981
Target:  5'- cGgCGC-CCCgCCGGgGAacaucaCGUCGUCGCg -3'
miRNA:   3'- aCaGCGaGGG-GGCCgCU------GCAGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.