miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 3' -60.5 NC_005337.1 + 119836 0.66 0.697225
Target:  5'- cGgCGCUCgguaCCCGGCGccagcgGCGgcaCGUCGCg -3'
miRNA:   3'- aCaGCGAGg---GGGCCGC------UGCa--GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 60158 0.67 0.637984
Target:  5'- cGUCGUaCCaCCCGGUcACGUgGaUCACg -3'
miRNA:   3'- aCAGCGaGG-GGGCCGcUGCAgC-AGUG- -5'
25552 3' -60.5 NC_005337.1 + 44306 0.67 0.647913
Target:  5'- cGcCGCUCCCCCGaGCG-CGUgcugCGgccgCGCc -3'
miRNA:   3'- aCaGCGAGGGGGC-CGCuGCA----GCa---GUG- -5'
25552 3' -60.5 NC_005337.1 + 74544 0.67 0.65783
Target:  5'- cG-CGCUCCgCCGcGCGGCG-CGUgAUg -3'
miRNA:   3'- aCaGCGAGGgGGC-CGCUGCaGCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 93983 0.67 0.667728
Target:  5'- -aUCGC-CCUCgGGCGAgGagGUCACc -3'
miRNA:   3'- acAGCGaGGGGgCCGCUgCagCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 29666 0.66 0.677598
Target:  5'- cGU-GCUCCCgCGGUGGCGcCGUa-- -3'
miRNA:   3'- aCAgCGAGGGgGCCGCUGCaGCAgug -5'
25552 3' -60.5 NC_005337.1 + 129613 0.66 0.677598
Target:  5'- cGUggaGCUCgUCCGGCGGC-UCGUgGCc -3'
miRNA:   3'- aCAg--CGAGgGGGCCGCUGcAGCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 40861 0.66 0.687433
Target:  5'- cGUCGCcgugCCCCCGGUgcagagGGCGgcCGUCc- -3'
miRNA:   3'- aCAGCGa---GGGGGCCG------CUGCa-GCAGug -5'
25552 3' -60.5 NC_005337.1 + 62410 0.66 0.697225
Target:  5'- cGcCGCcucgCCCgUGGCGuCGUCGUgCACc -3'
miRNA:   3'- aCaGCGa---GGGgGCCGCuGCAGCA-GUG- -5'
25552 3' -60.5 NC_005337.1 + 40815 0.67 0.618121
Target:  5'- --aCGUUCCCgCCGGCGgGCGUCuucCGCa -3'
miRNA:   3'- acaGCGAGGG-GGCCGC-UGCAGca-GUG- -5'
25552 3' -60.5 NC_005337.1 + 59168 0.68 0.598297
Target:  5'- cGUUcCUCCCCCaGGCcguGCGUCGgggCACc -3'
miRNA:   3'- aCAGcGAGGGGG-CCGc--UGCAGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 67724 0.68 0.578567
Target:  5'- cGUCGUccUCCgggaCCGGCGGCG-CGgcgCGCa -3'
miRNA:   3'- aCAGCG--AGGg---GGCCGCUGCaGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 123676 0.77 0.182132
Target:  5'- cGcCGCUCCCCC-GCGGCGggaccgggcUCGUCGCg -3'
miRNA:   3'- aCaGCGAGGGGGcCGCUGC---------AGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 130035 0.71 0.41226
Target:  5'- gGUCGCcgcgcugaacacUCaCCCGGCGACGUccguuguggccgCGUCGCu -3'
miRNA:   3'- aCAGCG------------AGgGGGCCGCUGCA------------GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 25674 0.7 0.482952
Target:  5'- cGcCGCggCCCUCgaaGGCGGCGUCG-CGCa -3'
miRNA:   3'- aCaGCGa-GGGGG---CCGCUGCAGCaGUG- -5'
25552 3' -60.5 NC_005337.1 + 65783 0.69 0.520424
Target:  5'- cUGUcCGCgCCCCCGGUG-CGcacCGUCAUg -3'
miRNA:   3'- -ACA-GCGaGGGGGCCGCuGCa--GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 110625 0.69 0.539586
Target:  5'- gGUCGaggUCCCuCCGGaCGACGcucUCGUCGg -3'
miRNA:   3'- aCAGCg--AGGG-GGCC-GCUGC---AGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 38852 0.69 0.549257
Target:  5'- -aUCGCUgCCCCGcGUGACGcUCGUgcgggCGCa -3'
miRNA:   3'- acAGCGAgGGGGC-CGCUGC-AGCA-----GUG- -5'
25552 3' -60.5 NC_005337.1 + 79093 0.69 0.549257
Target:  5'- --aCGCgcaugCCCaCCGGC-ACGUCGUCGa -3'
miRNA:   3'- acaGCGa----GGG-GGCCGcUGCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 130568 0.69 0.553141
Target:  5'- aUGUCGC-CCCCUGGCGcCGaggacaagaagccgCGUCGg -3'
miRNA:   3'- -ACAGCGaGGGGGCCGCuGCa-------------GCAGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.