miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 3' -60.5 NC_005337.1 + 3343 0.68 0.588417
Target:  5'- aUGcCGUagCCCCCGGUGGCcaugugguacauGUCGUCGu -3'
miRNA:   3'- -ACaGCGa-GGGGGCCGCUG------------CAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 4181 0.69 0.510943
Target:  5'- cGUCGCUgaCCCCGGCcucaACGgccugCGUCAg -3'
miRNA:   3'- aCAGCGAg-GGGGCCGc---UGCa----GCAGUg -5'
25552 3' -60.5 NC_005337.1 + 10081 0.69 0.510943
Target:  5'- aGUC-CUCCUCCGaCGACGUgGUgGCg -3'
miRNA:   3'- aCAGcGAGGGGGCcGCUGCAgCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 12929 0.67 0.627058
Target:  5'- cGUCGCcgccgaacUCCagguaCCGGCgGACGUccucgacCGUCACg -3'
miRNA:   3'- aCAGCG--------AGGg----GGCCG-CUGCA-------GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 17788 0.66 0.706966
Target:  5'- ---aGCUUCUCCaGGCG-CGUCuGUCGCg -3'
miRNA:   3'- acagCGAGGGGG-CCGCuGCAG-CAGUG- -5'
25552 3' -60.5 NC_005337.1 + 25099 0.67 0.647913
Target:  5'- ---aGCUCCgCCCGcGCGGCG-CGgcgCGCg -3'
miRNA:   3'- acagCGAGG-GGGC-CGCUGCaGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 25674 0.7 0.482952
Target:  5'- cGcCGCggCCCUCgaaGGCGGCGUCG-CGCa -3'
miRNA:   3'- aCaGCGa-GGGGG---CCGCUGCAGCaGUG- -5'
25552 3' -60.5 NC_005337.1 + 26740 0.66 0.716647
Target:  5'- uUGUCGgUgCUCCGGUcgccgcgaaacGugGUCGUCGu -3'
miRNA:   3'- -ACAGCgAgGGGGCCG-----------CugCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 29666 0.66 0.677598
Target:  5'- cGU-GCUCCCgCGGUGGCGcCGUa-- -3'
miRNA:   3'- aCAgCGAGGGgGCCGCUGCaGCAgug -5'
25552 3' -60.5 NC_005337.1 + 33509 0.68 0.608201
Target:  5'- gGUCGaagauCUCCgCCGuGCGccggcugcacGCGUCGUCGCc -3'
miRNA:   3'- aCAGC-----GAGGgGGC-CGC----------UGCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 34744 0.66 0.697225
Target:  5'- aGUCgGCggcgCaCCgGGCcGCGUCGUCGCa -3'
miRNA:   3'- aCAG-CGa---GgGGgCCGcUGCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 38852 0.69 0.549257
Target:  5'- -aUCGCUgCCCCGcGUGACGcUCGUgcgggCGCa -3'
miRNA:   3'- acAGCGAgGGGGC-CGCUGC-AGCA-----GUG- -5'
25552 3' -60.5 NC_005337.1 + 38913 0.69 0.510943
Target:  5'- cGUCGCUguugCCUUCGGCGAC-UCGgCGCu -3'
miRNA:   3'- aCAGCGA----GGGGGCCGCUGcAGCaGUG- -5'
25552 3' -60.5 NC_005337.1 + 40815 0.67 0.618121
Target:  5'- --aCGUUCCCgCCGGCGgGCGUCuucCGCa -3'
miRNA:   3'- acaGCGAGGG-GGCCGC-UGCAGca-GUG- -5'
25552 3' -60.5 NC_005337.1 + 40861 0.66 0.687433
Target:  5'- cGUCGCcgugCCCCCGGUgcagagGGCGgcCGUCc- -3'
miRNA:   3'- aCAGCGa---GGGGGCCG------CUGCa-GCAGug -5'
25552 3' -60.5 NC_005337.1 + 41582 0.72 0.363633
Target:  5'- cGUCGaagacggCCCCCagcgagGGCGugGUCGUgGCg -3'
miRNA:   3'- aCAGCga-----GGGGG------CCGCugCAGCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 44306 0.67 0.647913
Target:  5'- cGcCGCUCCCCCGaGCG-CGUgcugCGgccgCGCc -3'
miRNA:   3'- aCaGCGAGGGGGC-CGCuGCA----GCa---GUG- -5'
25552 3' -60.5 NC_005337.1 + 45408 0.7 0.464708
Target:  5'- cUGaCGCUCCaCUGcGCGGCGUCGgagCGCa -3'
miRNA:   3'- -ACaGCGAGGgGGC-CGCUGCAGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 56786 0.66 0.716647
Target:  5'- gGUCGCcgCCaugcaccgcCCCGG-GACG-CGUCGCc -3'
miRNA:   3'- aCAGCGa-GG---------GGGCCgCUGCaGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 59168 0.68 0.598297
Target:  5'- cGUUcCUCCCCCaGGCcguGCGUCGgggCACc -3'
miRNA:   3'- aCAGcGAGGGGG-CCGc--UGCAGCa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.