miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25558 5' -59.5 NC_005337.1 + 133032 0.7 0.491246
Target:  5'- aUCGCCcgGCuCGUCGUgUACGgGCCCGAu -3'
miRNA:   3'- gAGCGGa-CG-GCAGCG-AUGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 132265 0.67 0.669923
Target:  5'- -aCGCCgaugGCCGUgcUGCUGCGGucgUCCGAc -3'
miRNA:   3'- gaGCGGa---CGGCA--GCGAUGCU---GGGCUu -5'
25558 5' -59.5 NC_005337.1 + 132045 0.68 0.618419
Target:  5'- cCUCGCgcgguucCUGCgCG-CGCUcGCGGCCCGGg -3'
miRNA:   3'- -GAGCG-------GACG-GCaGCGA-UGCUGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 131888 0.69 0.549309
Target:  5'- -cCGCCUGCgcgUGUCGUcgACGcACCCGAu -3'
miRNA:   3'- gaGCGGACG---GCAGCGa-UGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 128301 0.66 0.748692
Target:  5'- -gCGCCUggcGCCGUCuGCUcgcgcGCGGCgCGAGc -3'
miRNA:   3'- gaGCGGA---CGGCAG-CGA-----UGCUGgGCUU- -5'
25558 5' -59.5 NC_005337.1 + 122721 0.67 0.659852
Target:  5'- -cCGCgUGCUGUCGC-ACGuGCCCGc- -3'
miRNA:   3'- gaGCGgACGGCAGCGaUGC-UGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 122674 0.67 0.648749
Target:  5'- gUgGCCcGCCGggugugccccugcUCGCUGCcGCCCGAGg -3'
miRNA:   3'- gAgCGGaCGGC-------------AGCGAUGcUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 117753 0.68 0.579153
Target:  5'- -aCGCCUGCUcUCGUUGgucuUGGCCCGGGu -3'
miRNA:   3'- gaGCGGACGGcAGCGAU----GCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 117508 0.66 0.709823
Target:  5'- -cUGCCUGCuCGaggUGCU-CGACCUGAAc -3'
miRNA:   3'- gaGCGGACG-GCa--GCGAuGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 117210 0.66 0.718679
Target:  5'- -cCGCCcGCCuGUCGCUGagcccucCGACCgGAu -3'
miRNA:   3'- gaGCGGaCGG-CAGCGAU-------GCUGGgCUu -5'
25558 5' -59.5 NC_005337.1 + 115501 0.68 0.609328
Target:  5'- -gCGCCgGCC-UCGCgaggucgACGACCUGGAg -3'
miRNA:   3'- gaGCGGaCGGcAGCGa------UGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 115425 0.66 0.728449
Target:  5'- uCUCGCCgGCCGuccgggagUCGCUGggguuccugguguCGGCCgGAGa -3'
miRNA:   3'- -GAGCGGaCGGC--------AGCGAU-------------GCUGGgCUU- -5'
25558 5' -59.5 NC_005337.1 + 107244 0.72 0.368658
Target:  5'- aCUCGCg-GCUGUCGCUGCuGGCCgGGGa -3'
miRNA:   3'- -GAGCGgaCGGCAGCGAUG-CUGGgCUU- -5'
25558 5' -59.5 NC_005337.1 + 103379 1.06 0.001934
Target:  5'- gCUCGCCUGCCGUCGCUACGACCCGAAg -3'
miRNA:   3'- -GAGCGGACGGCAGCGAUGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 101648 0.67 0.639652
Target:  5'- aUC-CCguacGCCGUCGCccuuUGCGACaCCGAAg -3'
miRNA:   3'- gAGcGGa---CGGCAGCG----AUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 101080 0.67 0.669923
Target:  5'- -gCGCCccGCCGUCGggAgGGCCCGu- -3'
miRNA:   3'- gaGCGGa-CGGCAGCgaUgCUGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 98589 0.66 0.699923
Target:  5'- gCUCGCCaGCCgGUCGaagGCGGCCUc-- -3'
miRNA:   3'- -GAGCGGaCGG-CAGCga-UGCUGGGcuu -5'
25558 5' -59.5 NC_005337.1 + 95326 0.69 0.547335
Target:  5'- gCUCGUCgucgguuagcgcGCCGUggCGCUGCGACaCCGGGg -3'
miRNA:   3'- -GAGCGGa-----------CGGCA--GCGAUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 95048 0.7 0.510311
Target:  5'- -aCGCCUGCgCGUUGUcGCGcacGCCCGGGu -3'
miRNA:   3'- gaGCGGACG-GCAGCGaUGC---UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 93773 0.68 0.619429
Target:  5'- cCUCGUCUucgaucGCCGgacgCGCUACGACgUGGu -3'
miRNA:   3'- -GAGCGGA------CGGCa---GCGAUGCUGgGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.