miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25558 5' -59.5 NC_005337.1 + 38903 0.72 0.376699
Target:  5'- gUCGCgCgGCCGUCGCUguugccuucgGCGACUCGGc -3'
miRNA:   3'- gAGCG-GaCGGCAGCGA----------UGCUGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 29544 0.67 0.667911
Target:  5'- uCUCGCCgaucuugaugccGCCGcCGCggcgGCGGCCCu-- -3'
miRNA:   3'- -GAGCGGa-----------CGGCaGCGa---UGCUGGGcuu -5'
25558 5' -59.5 NC_005337.1 + 101080 0.67 0.669923
Target:  5'- -gCGCCccGCCGUCGggAgGGCCCGu- -3'
miRNA:   3'- gaGCGGa-CGGCAGCgaUgCUGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 115425 0.66 0.728449
Target:  5'- uCUCGCCgGCCGuccgggagUCGCUGggguuccugguguCGGCCgGAGa -3'
miRNA:   3'- -GAGCGGaCGGC--------AGCGAU-------------GCUGGgCUU- -5'
25558 5' -59.5 NC_005337.1 + 39175 0.7 0.489357
Target:  5'- aUCGCCgacugcggcaagGCCGUCGCcGCGggcuacgcggACCCGGAc -3'
miRNA:   3'- gAGCGGa-----------CGGCAGCGaUGC----------UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 133032 0.7 0.491246
Target:  5'- aUCGCCcgGCuCGUCGUgUACGgGCCCGAu -3'
miRNA:   3'- gAGCGGa-CG-GCAGCG-AUGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 95326 0.69 0.547335
Target:  5'- gCUCGUCgucgguuagcgcGCCGUggCGCUGCGACaCCGGGg -3'
miRNA:   3'- -GAGCGGa-----------CGGCA--GCGAUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 10824 0.69 0.549309
Target:  5'- -aUGCCgUGCUGgCGCUGCGGCgCGGAg -3'
miRNA:   3'- gaGCGG-ACGGCaGCGAUGCUGgGCUU- -5'
25558 5' -59.5 NC_005337.1 + 103379 1.06 0.001934
Target:  5'- gCUCGCCUGCCGUCGCUACGACCCGAAg -3'
miRNA:   3'- -GAGCGGACGGCAGCGAUGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 56621 0.67 0.659852
Target:  5'- uUCGCCgGCCG-CGuCUACGACgCGc- -3'
miRNA:   3'- gAGCGGaCGGCaGC-GAUGCUGgGCuu -5'
25558 5' -59.5 NC_005337.1 + 93773 0.68 0.619429
Target:  5'- cCUCGUCUucgaucGCCGgacgCGCUACGACgUGGu -3'
miRNA:   3'- -GAGCGGA------CGGCa---GCGAUGCUGgGCUu -5'
25558 5' -59.5 NC_005337.1 + 115501 0.68 0.609328
Target:  5'- -gCGCCgGCC-UCGCgaggucgACGACCUGGAg -3'
miRNA:   3'- gaGCGGaCGGcAGCGa------UGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 23889 0.71 0.427358
Target:  5'- uUCGCCUGCCuccuccgccuGUCGCUGCcgcgcGCCCGc- -3'
miRNA:   3'- gAGCGGACGG----------CAGCGAUGc----UGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 72372 0.67 0.639652
Target:  5'- aUCGCgCggacgGCCGUCGCggucaGCGAgccCCCGGGg -3'
miRNA:   3'- gAGCG-Ga----CGGCAGCGa----UGCU---GGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 2164 0.71 0.436187
Target:  5'- --aGCCUGCCG-CGC-ACGGCgCCGAc -3'
miRNA:   3'- gagCGGACGGCaGCGaUGCUG-GGCUu -5'
25558 5' -59.5 NC_005337.1 + 117753 0.68 0.579153
Target:  5'- -aCGCCUGCUcUCGUUGgucuUGGCCCGGGu -3'
miRNA:   3'- gaGCGGACGGcAGCGAU----GCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 101648 0.67 0.639652
Target:  5'- aUC-CCguacGCCGUCGCccuuUGCGACaCCGAAg -3'
miRNA:   3'- gAGcGGa---CGGCAGCG----AUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 66028 0.67 0.669923
Target:  5'- gCUCGCCcacgcGCCGgccgCGCUcCGgaACCCGGAc -3'
miRNA:   3'- -GAGCGGa----CGGCa---GCGAuGC--UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 83145 0.7 0.481837
Target:  5'- uUCGCCUGCuCGUCGgUGCG-CUCGc- -3'
miRNA:   3'- gAGCGGACG-GCAGCgAUGCuGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 15869 0.69 0.539463
Target:  5'- gCUCGCCgGCC-UCGCUcAUGACCgGGu -3'
miRNA:   3'- -GAGCGGaCGGcAGCGA-UGCUGGgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.