miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 1259 0.72 0.561825
Target:  5'- cGGGCGA--UCAGCCGCAggaugGCCCGCgGa -3'
miRNA:   3'- -CUUGCUggAGUUGGCGUa----CGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 106852 0.72 0.571999
Target:  5'- cGACGACC-CGGgCGCGUGCUUugCGg -3'
miRNA:   3'- cUUGCUGGaGUUgGCGUACGGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 24524 0.72 0.581193
Target:  5'- cGGACGACCUCGcggacguGCUGC--GCaCCGCCGa -3'
miRNA:   3'- -CUUGCUGGAGU-------UGGCGuaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 24887 0.72 0.582217
Target:  5'- uGGACGGCaCgccaGACCcgcGCGUGCCCGCCu -3'
miRNA:   3'- -CUUGCUG-Gag--UUGG---CGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 84966 0.72 0.582217
Target:  5'- uGGAUGGCCUCcagguAUCGCcgGUCCGCCc -3'
miRNA:   3'- -CUUGCUGGAGu----UGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 79957 0.72 0.582217
Target:  5'- uGACGGCgUC-GCCGCugGUGUCCACCa -3'
miRNA:   3'- cUUGCUGgAGuUGGCG--UACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 40156 0.72 0.592471
Target:  5'- -uACGugCUCAuggucaccgACCGCGUGUUCAUCGa -3'
miRNA:   3'- cuUGCugGAGU---------UGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59159 0.72 0.602755
Target:  5'- --uCGACCUCcGCCGCGcUGgUCACCGu -3'
miRNA:   3'- cuuGCUGGAGuUGGCGU-ACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 93746 0.72 0.602755
Target:  5'- -cGCGcGCCgcggCGGCUGCAUGCCgCACCu -3'
miRNA:   3'- cuUGC-UGGa---GUUGGCGUACGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 39224 0.72 0.602755
Target:  5'- cGGGCGugCgcgaCAACgCGCAggcguuccUGCCCGCCGu -3'
miRNA:   3'- -CUUGCugGa---GUUG-GCGU--------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59403 0.71 0.613061
Target:  5'- cGAUGGCCgUGACCaGCAUGCCCGCg- -3'
miRNA:   3'- cUUGCUGGaGUUGG-CGUACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 90877 0.71 0.613061
Target:  5'- -cGCGGCC---ACCGUcuugGUGCCCACCGc -3'
miRNA:   3'- cuUGCUGGaguUGGCG----UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 29664 0.71 0.613061
Target:  5'- -cGCGugCUCccgcgguggcGCCGUAUGCUCGCCGc -3'
miRNA:   3'- cuUGCugGAGu---------UGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 54052 0.71 0.613061
Target:  5'- --cCGACCcCGACCGCGUGCgCGCg- -3'
miRNA:   3'- cuuGCUGGaGUUGGCGUACGgGUGgc -5'
25638 3' -55.8 NC_005337.1 + 73460 0.71 0.623382
Target:  5'- -cGCGGCggu-GCCGCGUGCCCGCgGa -3'
miRNA:   3'- cuUGCUGgaguUGGCGUACGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 75879 0.71 0.623382
Target:  5'- uGGCGGCCUCcgagaaCGUgcGCCCGCCGa -3'
miRNA:   3'- cUUGCUGGAGuug---GCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 25532 0.71 0.633709
Target:  5'- cAGCGGCC-CAcgcGCCGCGagaauccgaUGUCCGCCGa -3'
miRNA:   3'- cUUGCUGGaGU---UGGCGU---------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 97877 0.71 0.633709
Target:  5'- --cCGugCUCAACCGCAUGgUCAUgGa -3'
miRNA:   3'- cuuGCugGAGUUGGCGUACgGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.