miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 123872 0.74 0.71117
Target:  5'- gGGCgcgGCGCGUACGGCCUCGUcuucauuCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUGGAGUAcu-----GG- -5'
25638 5' -52.4 NC_005337.1 + 94600 0.74 0.71117
Target:  5'- gGGUcaUGUACACGUugGCGGCC--AUGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCG--UGCUGGagUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 66949 0.73 0.721341
Target:  5'- gGGCgUGUACAC-CAUGACCUgGUccucGGCCa -3'
miRNA:   3'- -CCG-ACAUGUGcGUGCUGGAgUA----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 90393 0.73 0.731433
Target:  5'- uGGUacgUGUGCGCGuCGCGcACgUUCGUGGCCg -3'
miRNA:   3'- -CCG---ACAUGUGC-GUGC-UG-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 14637 0.73 0.741434
Target:  5'- gGGCUGguauguguCGCGCACGGCaUCGUguuugGACCg -3'
miRNA:   3'- -CCGACau------GUGCGUGCUGgAGUA-----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 5559 0.73 0.751336
Target:  5'- cGGCUcgcgGUACACGCGCGccaGCCgCGUcGCCa -3'
miRNA:   3'- -CCGA----CAUGUGCGUGC---UGGaGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 120327 0.73 0.751336
Target:  5'- cGCcgacggGUGCAUGCuggACGACCUCAUGAa- -3'
miRNA:   3'- cCGa-----CAUGUGCG---UGCUGGAGUACUgg -5'
25638 5' -52.4 NC_005337.1 + 68327 0.73 0.761128
Target:  5'- gGGCg--GCACGCGCGugCcCGUG-CCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 122224 0.72 0.7708
Target:  5'- aGCUGUGCACGCucgccaaguCGGgCgugaaCGUGACCg -3'
miRNA:   3'- cCGACAUGUGCGu--------GCUgGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 132957 0.72 0.780343
Target:  5'- cGGCcucGUGCACGUGC-ACCugguggUCGUGACCg -3'
miRNA:   3'- -CCGa--CAUGUGCGUGcUGG------AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 10444 0.72 0.789746
Target:  5'- cGGCgGUGCGCGCGuCGugCgccagGACCu -3'
miRNA:   3'- -CCGaCAUGUGCGU-GCugGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 71596 0.72 0.789746
Target:  5'- gGGCUacGUGCugGUcaACGGCaaCGUGGCCa -3'
miRNA:   3'- -CCGA--CAUGugCG--UGCUGgaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 107174 0.72 0.798083
Target:  5'- cGGCUGcuggagaUGC-CGCugGACUUCGUGgucACCu -3'
miRNA:   3'- -CCGAC-------AUGuGCGugCUGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 52085 0.72 0.805387
Target:  5'- cGGCcGUGCGCGCccgGCGGCCgCGUGcaggugcgcgacggGCCg -3'
miRNA:   3'- -CCGaCAUGUGCG---UGCUGGaGUAC--------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 104057 0.71 0.817029
Target:  5'- cGC---GCACGCucgacgACGACUUCGUGGCCg -3'
miRNA:   3'- cCGacaUGUGCG------UGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 96288 0.71 0.817029
Target:  5'- cGGCggcGUugGggUGCAUGAUCUgCAUGGCCg -3'
miRNA:   3'- -CCGa--CAugU--GCGUGCUGGA-GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 69077 0.71 0.817029
Target:  5'- cGGCggGUGCACgaGCACGAgcucuaCCUCGUGgugcACCu -3'
miRNA:   3'- -CCGa-CAUGUG--CGUGCU------GGAGUAC----UGG- -5'
25638 5' -52.4 NC_005337.1 + 79875 0.71 0.817029
Target:  5'- aGGCUGUaggACACGCgaugcACGAUCgaCAUGGCg -3'
miRNA:   3'- -CCGACA---UGUGCG-----UGCUGGa-GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 32991 0.71 0.825784
Target:  5'- cGC-GUGC-CGCAUGuCCUCgAUGGCCg -3'
miRNA:   3'- cCGaCAUGuGCGUGCuGGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 24460 0.71 0.834355
Target:  5'- gGGCaGUACGucacgcUGCACGACCUC--GACUa -3'
miRNA:   3'- -CCGaCAUGU------GCGUGCUGGAGuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.