miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 56063 1.16 0.002238
Target:  5'- cGGCUGUACACGCACGACCUCAUGACCg -3'
miRNA:   3'- -CCGACAUGUGCGUGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 84549 0.8 0.359693
Target:  5'- cGGCUGUGgaaacgaACGCGCGGCagcgCGUGACCg -3'
miRNA:   3'- -CCGACAUg------UGCGUGCUGga--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 42206 0.8 0.371192
Target:  5'- cGCUGUGCGCGgacuucaagcccagcUACGACCUCAcccgGACCu -3'
miRNA:   3'- cCGACAUGUGC---------------GUGCUGGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 36766 0.79 0.410698
Target:  5'- gGGCacggUGUGCACGCG-GACCUCGUgcGACCc -3'
miRNA:   3'- -CCG----ACAUGUGCGUgCUGGAGUA--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 39762 0.79 0.410698
Target:  5'- uGCUGUACGCGCGCGuCUUC--GACCu -3'
miRNA:   3'- cCGACAUGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 18724 0.79 0.410698
Target:  5'- aGCUGcgGCGCGCugGcGCCUC-UGACCg -3'
miRNA:   3'- cCGACa-UGUGCGugC-UGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 43892 0.79 0.437829
Target:  5'- uGGUgaUGUGCACGCGCGGCCggaagaGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 117258 0.76 0.555319
Target:  5'- cGCaGUGCGCGCugGACgUCGaGGCCc -3'
miRNA:   3'- cCGaCAUGUGCGugCUGgAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 90564 0.76 0.555319
Target:  5'- cGGCUgccGUACACGgACGAgCUCAcgugGACCc -3'
miRNA:   3'- -CCGA---CAUGUGCgUGCUgGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 32515 0.76 0.565602
Target:  5'- aGGUUGUGCACcuccaGgAgGACCUCGUGGCUc -3'
miRNA:   3'- -CCGACAUGUG-----CgUgCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 90362 0.76 0.575933
Target:  5'- cGGCcGU-UACGCGCGGCCUCuucccGGCCg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCUGGAGua---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 106588 0.76 0.586306
Target:  5'- uGGC-GUGgACGCGCGACCUgG-GGCCc -3'
miRNA:   3'- -CCGaCAUgUGCGUGCUGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 84221 0.75 0.617602
Target:  5'- uGCUGUGCGgGCGCGGCCUgcgGGCa -3'
miRNA:   3'- cCGACAUGUgCGUGCUGGAguaCUGg -5'
25638 5' -52.4 NC_005337.1 + 39636 0.75 0.638537
Target:  5'- gGGCcaUGUACACGCagcggcGCGGCCgcguggggcgCGUGGCCc -3'
miRNA:   3'- -CCG--ACAUGUGCG------UGCUGGa---------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 102235 0.75 0.638537
Target:  5'- cGGCUGUgGCGCGUgcagACGGCCgggugcgucacCGUGGCCa -3'
miRNA:   3'- -CCGACA-UGUGCG----UGCUGGa----------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 92722 0.75 0.659451
Target:  5'- gGGCgGUu--CG-ACGACCUCGUGGCCg -3'
miRNA:   3'- -CCGaCAuguGCgUGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 38343 0.74 0.670919
Target:  5'- uGGCUGgacguggagcgcgagGCGCGCGCGGCCgcCGUcGCCg -3'
miRNA:   3'- -CCGACa--------------UGUGCGUGCUGGa-GUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 42395 0.74 0.690626
Target:  5'- aGGCgccGCgGCGCGCGGCCUCGcUGugCg -3'
miRNA:   3'- -CCGacaUG-UGCGUGCUGGAGU-ACugG- -5'
25638 5' -52.4 NC_005337.1 + 130886 0.74 0.700928
Target:  5'- cGGCa--ACACGC-CGcugcACCUCAUGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGuGC----UGGAGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.