miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 96288 0.71 0.817029
Target:  5'- cGGCggcGUugGggUGCAUGAUCUgCAUGGCCg -3'
miRNA:   3'- -CCGa--CAugU--GCGUGCUGGA-GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 123872 0.74 0.71117
Target:  5'- gGGCgcgGCGCGUACGGCCUCGUcuucauuCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUGGAGUAcu-----GG- -5'
25638 5' -52.4 NC_005337.1 + 90393 0.73 0.731433
Target:  5'- uGGUacgUGUGCGCGuCGCGcACgUUCGUGGCCg -3'
miRNA:   3'- -CCG---ACAUGUGC-GUGC-UG-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 120327 0.73 0.751336
Target:  5'- cGCcgacggGUGCAUGCuggACGACCUCAUGAa- -3'
miRNA:   3'- cCGa-----CAUGUGCG---UGCUGGAGUACUgg -5'
25638 5' -52.4 NC_005337.1 + 68327 0.73 0.761128
Target:  5'- gGGCg--GCACGCGCGugCcCGUG-CCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 132957 0.72 0.780343
Target:  5'- cGGCcucGUGCACGUGC-ACCugguggUCGUGACCg -3'
miRNA:   3'- -CCGa--CAUGUGCGUGcUGG------AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 10444 0.72 0.789746
Target:  5'- cGGCgGUGCGCGCGuCGugCgccagGACCu -3'
miRNA:   3'- -CCGaCAUGUGCGU-GCugGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 71596 0.72 0.789746
Target:  5'- gGGCUacGUGCugGUcaACGGCaaCGUGGCCa -3'
miRNA:   3'- -CCGA--CAUGugCG--UGCUGgaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 52085 0.72 0.805387
Target:  5'- cGGCcGUGCGCGCccgGCGGCCgCGUGcaggugcgcgacggGCCg -3'
miRNA:   3'- -CCGaCAUGUGCG---UGCUGGaGUAC--------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 94600 0.74 0.71117
Target:  5'- gGGUcaUGUACACGUugGCGGCC--AUGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCG--UGCUGGagUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 42395 0.74 0.690626
Target:  5'- aGGCgccGCgGCGCGCGGCCUCGcUGugCg -3'
miRNA:   3'- -CCGacaUG-UGCGUGCUGGAGU-ACugG- -5'
25638 5' -52.4 NC_005337.1 + 38343 0.74 0.670919
Target:  5'- uGGCUGgacguggagcgcgagGCGCGCGCGGCCgcCGUcGCCg -3'
miRNA:   3'- -CCGACa--------------UGUGCGUGCUGGa-GUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 39762 0.79 0.410698
Target:  5'- uGCUGUACGCGCGCGuCUUC--GACCu -3'
miRNA:   3'- cCGACAUGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 36766 0.79 0.410698
Target:  5'- gGGCacggUGUGCACGCG-GACCUCGUgcGACCc -3'
miRNA:   3'- -CCG----ACAUGUGCGUgCUGGAGUA--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 43892 0.79 0.437829
Target:  5'- uGGUgaUGUGCACGCGCGGCCggaagaGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 90564 0.76 0.555319
Target:  5'- cGGCUgccGUACACGgACGAgCUCAcgugGACCc -3'
miRNA:   3'- -CCGA---CAUGUGCgUGCUgGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 117258 0.76 0.555319
Target:  5'- cGCaGUGCGCGCugGACgUCGaGGCCc -3'
miRNA:   3'- cCGaCAUGUGCGugCUGgAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 32515 0.76 0.565602
Target:  5'- aGGUUGUGCACcuccaGgAgGACCUCGUGGCUc -3'
miRNA:   3'- -CCGACAUGUG-----CgUgCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 84221 0.75 0.617602
Target:  5'- uGCUGUGCGgGCGCGGCCUgcgGGCa -3'
miRNA:   3'- cCGACAUGUgCGUGCUGGAguaCUGg -5'
25638 5' -52.4 NC_005337.1 + 39636 0.75 0.638537
Target:  5'- gGGCcaUGUACACGCagcggcGCGGCCgcguggggcgCGUGGCCc -3'
miRNA:   3'- -CCG--ACAUGUGCG------UGCUGGa---------GUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.