miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 92657 0.66 0.979283
Target:  5'- gGGCgucGCAC-CACGGCCUCcuucgccacGACCa -3'
miRNA:   3'- -CCGacaUGUGcGUGCUGGAGua-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 15466 0.66 0.974327
Target:  5'- uGGCUGgccaccgacgGCGCGCGCGGCacgaCGgcGCCg -3'
miRNA:   3'- -CCGACa---------UGUGCGUGCUGga--GUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 122440 0.66 0.971549
Target:  5'- cGGCacaUGCACGC-CGACUUCAUcGCg -3'
miRNA:   3'- -CCGac-AUGUGCGuGCUGGAGUAcUGg -5'
25638 5' -52.4 NC_005337.1 + 104937 0.66 0.976903
Target:  5'- cGCaUGgacucCACGCACGuauccaagguCUUCAUGACCc -3'
miRNA:   3'- cCG-ACau---GUGCGUGCu---------GGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 84799 0.66 0.979283
Target:  5'- -cCUGUcCACGCAgGACUUC--GACCc -3'
miRNA:   3'- ccGACAuGUGCGUgCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 2924 0.66 0.981266
Target:  5'- cGGC-GUcgccggagugccgACGCGCACGGCgCgCAUGAgCg -3'
miRNA:   3'- -CCGaCA-------------UGUGCGUGCUG-GaGUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 124849 0.66 0.974059
Target:  5'- cGGCUcGUACAcguccucguggauCGCaugccgccuACGGCCUCcgagGACCu -3'
miRNA:   3'- -CCGA-CAUGU-------------GCG---------UGCUGGAGua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 56852 0.66 0.976903
Target:  5'- cGGCUucGUgcGCAUGCACcGCCagcgCAUGGCg -3'
miRNA:   3'- -CCGA--CA--UGUGCGUGcUGGa---GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 3747 0.66 0.979283
Target:  5'- uGGCgcccGCGCGCACcaggaACUcCAUGACCu -3'
miRNA:   3'- -CCGaca-UGUGCGUGc----UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 100224 0.66 0.971549
Target:  5'- cGGCgccgcGUGCGCGUgaucGCGgucccGCCcgcCAUGACCg -3'
miRNA:   3'- -CCGa----CAUGUGCG----UGC-----UGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 93201 0.66 0.983491
Target:  5'- uGGaUGU---CGCACGACCUCcugGACUa -3'
miRNA:   3'- -CCgACAuguGCGUGCUGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 69233 0.66 0.974327
Target:  5'- ---cGUGCGCGCGCG-CCUggaCGUG-CCg -3'
miRNA:   3'- ccgaCAUGUGCGUGCuGGA---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 74972 0.66 0.974327
Target:  5'- cGGCU--ACGCGauaGCGGCCggGUcGACCa -3'
miRNA:   3'- -CCGAcaUGUGCg--UGCUGGagUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2410 0.66 0.979283
Target:  5'- aGGCa----GCGgACGACCUCGgggucggGGCCg -3'
miRNA:   3'- -CCGacaugUGCgUGCUGGAGUa------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 95696 0.66 0.980838
Target:  5'- cGCUGUcggggauguaguccGCGCGCagcaGCGACC-CcgGACg -3'
miRNA:   3'- cCGACA--------------UGUGCG----UGCUGGaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 112861 0.66 0.971549
Target:  5'- gGGCcaa--GCGCGCG-CUUCAUGACg -3'
miRNA:   3'- -CCGacaugUGCGUGCuGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 96957 0.66 0.979283
Target:  5'- uGCUcgcCGCGCGCGACCagcuccUCGcGGCCg -3'
miRNA:   3'- cCGAcauGUGCGUGCUGG------AGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 39124 0.66 0.976903
Target:  5'- gGGCagcGUGCGCucGCuCGugCUUAUGACg -3'
miRNA:   3'- -CCGa--CAUGUG--CGuGCugGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 1184 0.66 0.981477
Target:  5'- aGGCgGUGCGCgaGCGCGGCaCgggcgcgCAUuucGACCa -3'
miRNA:   3'- -CCGaCAUGUG--CGUGCUG-Ga------GUA---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 56198 0.66 0.979283
Target:  5'- uGC-GUACGCGCGCuACCUgcaggaCGUGGCg -3'
miRNA:   3'- cCGaCAUGUGCGUGcUGGA------GUACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.