miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 984 0.66 0.976903
Target:  5'- gGGCUGgcgcgGCGCGCggagggcggGCGucGCCUgGaGGCCg -3'
miRNA:   3'- -CCGACa----UGUGCG---------UGC--UGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 984 0.66 0.976903
Target:  5'- gGGCUGgcgcgGCGCGCggagggcggGCGucGCCUgGaGGCCg -3'
miRNA:   3'- -CCGACa----UGUGCG---------UGC--UGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 1184 0.66 0.981477
Target:  5'- aGGCgGUGCGCgaGCGCGGCaCgggcgcgCAUuucGACCa -3'
miRNA:   3'- -CCGaCAUGUG--CGUGCUG-Ga------GUA---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 1446 0.67 0.969781
Target:  5'- cGGCgccgagGUGCgcgaccacguacgccACGCACuGCCUCGUGGUCu -3'
miRNA:   3'- -CCGa-----CAUG---------------UGCGUGcUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 2201 0.66 0.974327
Target:  5'- cGGCggacGCGgGCGCGGCC-CG-GGCCg -3'
miRNA:   3'- -CCGaca-UGUgCGUGCUGGaGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 2410 0.66 0.979283
Target:  5'- aGGCa----GCGgACGACCUCGgggucggGGCCg -3'
miRNA:   3'- -CCGacaugUGCgUGCUGGAGUa------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2775 0.7 0.874171
Target:  5'- aGGCUGUcCACgaGCGCGgACCggugccgCAUGugCa -3'
miRNA:   3'- -CCGACAuGUG--CGUGC-UGGa------GUACugG- -5'
25638 5' -52.4 NC_005337.1 + 2924 0.66 0.981266
Target:  5'- cGGC-GUcgccggagugccgACGCGCACGGCgCgCAUGAgCg -3'
miRNA:   3'- -CCGaCA-------------UGUGCGUGCUG-GaGUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 3630 0.69 0.920323
Target:  5'- gGGCaccUGUGCguccaGCGcCGCGGCCUCGUcGuCCg -3'
miRNA:   3'- -CCG---ACAUG-----UGC-GUGCUGGAGUA-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 3747 0.66 0.979283
Target:  5'- uGGCgcccGCGCGCACcaggaACUcCAUGACCu -3'
miRNA:   3'- -CCGaca-UGUGCGUGc----UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 3996 0.68 0.931295
Target:  5'- cGCuUGgacgAUGCGCACGuCCUUggGGCCa -3'
miRNA:   3'- cCG-ACa---UGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 4105 0.68 0.941269
Target:  5'- uGCUccGCGCGCACGGCCUCc-GAa- -3'
miRNA:   3'- cCGAcaUGUGCGUGCUGGAGuaCUgg -5'
25638 5' -52.4 NC_005337.1 + 4148 0.7 0.866636
Target:  5'- aGUUGUACA-GgGCGGCCUCAacGCCg -3'
miRNA:   3'- cCGACAUGUgCgUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 5559 0.73 0.751336
Target:  5'- cGGCUcgcgGUACACGCGCGccaGCCgCGUcGCCa -3'
miRNA:   3'- -CCGA----CAUGUGCGUGC---UGGaGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 5831 0.7 0.85888
Target:  5'- cGGCggugugaaGUGCgGC-CGCGACCUCGcUGGCCu -3'
miRNA:   3'- -CCGa-------CAUG-UGcGUGCUGGAGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 6418 0.68 0.931295
Target:  5'- -aCUGUGCACGCacagcagcGCGGCCUCcgaGuCCg -3'
miRNA:   3'- ccGACAUGUGCG--------UGCUGGAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 7861 0.67 0.96856
Target:  5'- cGCcGUcGCGCGCcggGCGGCCU--UGGCCg -3'
miRNA:   3'- cCGaCA-UGUGCG---UGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 8362 0.68 0.950253
Target:  5'- uGCgagGCGCgGCACGAgCUCccaAUGGCCa -3'
miRNA:   3'- cCGacaUGUG-CGUGCUgGAG---UACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.