miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 5' -54.8 NC_005337.1 + 42388 0.66 0.914571
Target:  5'- -gAC-CCGGA-GGcGCCGCGGcGCGCg -3'
miRNA:   3'- caUGaGGUCUaCCaUGGCGUC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 110332 0.66 0.91397
Target:  5'- -gGCccggCCGGgcGGcgucgcgcgcgccUGCCGCGGGCGCg -3'
miRNA:   3'- caUGa---GGUCuaCC-------------AUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 130509 0.66 0.910922
Target:  5'- cUGCUCgUGGGaggucauggaguuccUGGUGCgCGCGGGCGCc -3'
miRNA:   3'- cAUGAG-GUCU---------------ACCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 59066 0.66 0.90844
Target:  5'- -gACUCCGGGUGGcUGgCGCuGGUcucGCg -3'
miRNA:   3'- caUGAGGUCUACC-AUgGCGuCCG---UGa -5'
25659 5' -54.8 NC_005337.1 + 31521 0.66 0.90844
Target:  5'- --cCUCCGGGUGGaugguggGCUgguaguuguacaGCAGGCGCg -3'
miRNA:   3'- cauGAGGUCUACCa------UGG------------CGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 77368 0.66 0.90844
Target:  5'- -aGCcCCGGAUcccgcGGUGCCGCAacaccagccGGCGCc -3'
miRNA:   3'- caUGaGGUCUA-----CCAUGGCGU---------CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 26453 0.66 0.90844
Target:  5'- aGUGCUcCCAGA-GGUACagacaG-AGGCACg -3'
miRNA:   3'- -CAUGA-GGUCUaCCAUGg----CgUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 80195 0.66 0.90844
Target:  5'- -cGCUCC------UGCCGCGGGCGCUg -3'
miRNA:   3'- caUGAGGucuaccAUGGCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 84973 0.66 0.90844
Target:  5'- --cCUCCAGGUaucgccGGU-CCGCccGGGCGCg -3'
miRNA:   3'- cauGAGGUCUA------CCAuGGCG--UCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 68117 0.66 0.902059
Target:  5'- cGUACUCgGGGUcgcGGgGCCGguGGcCGCg -3'
miRNA:   3'- -CAUGAGgUCUA---CCaUGGCguCC-GUGa -5'
25659 5' -54.8 NC_005337.1 + 127661 0.66 0.902059
Target:  5'- cGUGCcggcgccucaUCCAGAUGGgcGCCGaccuGGCGCc -3'
miRNA:   3'- -CAUG----------AGGUCUACCa-UGGCgu--CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 100057 0.66 0.888563
Target:  5'- ----aCgAGAUGGUcgACCGCcGGCACa -3'
miRNA:   3'- caugaGgUCUACCA--UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 97906 0.67 0.874114
Target:  5'- cGUACUCCAGccagGGgccGCCGCccguGGGCGu- -3'
miRNA:   3'- -CAUGAGGUCua--CCa--UGGCG----UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 65514 0.67 0.866544
Target:  5'- gGUACUCgaugcggugCGGccGGUGCUGgAGGCGCa -3'
miRNA:   3'- -CAUGAG---------GUCuaCCAUGGCgUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 6859 0.67 0.866544
Target:  5'- -cACggucgCCAGGUGGUGCaGCAGcGUGCg -3'
miRNA:   3'- caUGa----GGUCUACCAUGgCGUC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 96079 0.67 0.866544
Target:  5'- -gGCUCCGGcguacacgGGgcaCGCGGGCGCg -3'
miRNA:   3'- caUGAGGUCua------CCaugGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 34407 0.67 0.866544
Target:  5'- gGUGCUCCAGGgcaGGcccgACCGCcuGGCGg- -3'
miRNA:   3'- -CAUGAGGUCUa--CCa---UGGCGu-CCGUga -5'
25659 5' -54.8 NC_005337.1 + 89166 0.67 0.865775
Target:  5'- gGUGCUCCgcgucgucugcuuAGggGGUGCCG--GGCGCUc -3'
miRNA:   3'- -CAUGAGG-------------UCuaCCAUGGCguCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 22851 0.67 0.858752
Target:  5'- -cGCUCguGcUGG-ACCGCGGcGCGCUc -3'
miRNA:   3'- caUGAGguCuACCaUGGCGUC-CGUGA- -5'
25659 5' -54.8 NC_005337.1 + 74600 0.67 0.850743
Target:  5'- -gGCUcucCCGGGUcGUGCuCGCGGGCGCc -3'
miRNA:   3'- caUGA---GGUCUAcCAUG-GCGUCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.