Results 21 - 40 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25661 | 5' | -58.1 | NC_005337.1 | + | 131551 | 0.74 | 0.362362 |
Target: 5'- uACCGGcGGACGUCGUCgCGC-UCGUGCUc -3' miRNA: 3'- -UGGCU-CCUGCGGUAG-GUGuAGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 78551 | 0.74 | 0.378363 |
Target: 5'- uACaCGGGcGCGCCGUgCGCGUCGUGCUu -3' miRNA: 3'- -UG-GCUCcUGCGGUAgGUGUAGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 40129 | 0.74 | 0.378363 |
Target: 5'- cACCGuGGugGUCAUCUcCAUCGUGUg -3' miRNA: 3'- -UGGCuCCugCGGUAGGuGUAGCGCGg -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 33066 | 0.74 | 0.386539 |
Target: 5'- aACCc-GGACGCCAUCagGCAUCGCaCCa -3' miRNA: 3'- -UGGcuCCUGCGGUAGg-UGUAGCGcGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 132093 | 0.74 | 0.386539 |
Target: 5'- cGCCGccuGCGCCGUgCGCGUCGgCGCCg -3' miRNA: 3'- -UGGCuccUGCGGUAgGUGUAGC-GCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 82640 | 0.74 | 0.386539 |
Target: 5'- gACCGcGGAgCGCCGaCCGCAgcUCGuCGCCg -3' miRNA: 3'- -UGGCuCCU-GCGGUaGGUGU--AGC-GCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 49725 | 0.74 | 0.393997 |
Target: 5'- cGCCGguugagcGGGACGCCGgaCACggUGCGCCg -3' miRNA: 3'- -UGGC-------UCCUGCGGUagGUGuaGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 108885 | 0.73 | 0.403238 |
Target: 5'- uCCGAGGcCGCCA-CCGCG--GCGCCc -3' miRNA: 3'- uGGCUCCuGCGGUaGGUGUagCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 31840 | 0.73 | 0.403238 |
Target: 5'- cACCGuGGACGCggagaaccacucCAUguccaCCGCGUCGCGCUc -3' miRNA: 3'- -UGGCuCCUGCG------------GUA-----GGUGUAGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 127592 | 0.73 | 0.403238 |
Target: 5'- aGCCGuGGACGUCG-CCGaGUCGUGCUg -3' miRNA: 3'- -UGGCuCCUGCGGUaGGUgUAGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 114844 | 0.73 | 0.411757 |
Target: 5'- cGCCGAGGACuaCcUCCGCGacCGCGUCu -3' miRNA: 3'- -UGGCUCCUGcgGuAGGUGUa-GCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 814 | 0.73 | 0.437968 |
Target: 5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3' miRNA: 3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 814 | 0.73 | 0.437968 |
Target: 5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3' miRNA: 3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 38082 | 0.72 | 0.446916 |
Target: 5'- uCCGuGGGCGCCA-CCACGcucauguacaUCGUGCUc -3' miRNA: 3'- uGGCuCCUGCGGUaGGUGU----------AGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 12695 | 0.72 | 0.446916 |
Target: 5'- uACCGuucccGGugG-CGUCCGCGcgCGCGCCg -3' miRNA: 3'- -UGGCu----CCugCgGUAGGUGUa-GCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 37431 | 0.72 | 0.446916 |
Target: 5'- aGCCGGGGgaACGCCAcgCCGCGgcUGCGCa -3' miRNA: 3'- -UGGCUCC--UGCGGUa-GGUGUa-GCGCGg -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 12739 | 0.72 | 0.455964 |
Target: 5'- uGCCgGAGGAUGuCCGucUCCACGUcCGCGUa -3' miRNA: 3'- -UGG-CUCCUGC-GGU--AGGUGUA-GCGCGg -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 40822 | 0.72 | 0.459611 |
Target: 5'- cGCCGGcGGGCGUCuUCCGCAUgagccgcacgggacaCGCGUCg -3' miRNA: 3'- -UGGCU-CCUGCGGuAGGUGUA---------------GCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 38661 | 0.72 | 0.46511 |
Target: 5'- cGCCcacGGACGCCG-CCAUggCGCGCUg -3' miRNA: 3'- -UGGcu-CCUGCGGUaGGUGuaGCGCGG- -5' |
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25661 | 5' | -58.1 | NC_005337.1 | + | 102548 | 0.72 | 0.46511 |
Target: 5'- uGCgCGAGGAgGUCGUcaCCGCGUaCGCGCUc -3' miRNA: 3'- -UG-GCUCCUgCGGUA--GGUGUA-GCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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